| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5794 |
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| Symbol | |
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| ID | 7974915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 495362 |
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| End bp | 497524 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796375 |
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| Product | integral membrane protein, YccS/YhfK family |
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| Protein accession | YP_002947649 |
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| Protein GI | 239820464 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1289] Predicted membrane protein |
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| TIGRFAM ID | [TIGR01666] hypothetical membrane protein, TIGR01666
[TIGR01667] integral membrane protein, YccS/YhfK family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGGCC GCGCCCAGCC GCTGCGGGTG TTGCTCACGC TCGGCAGCCT GATGGCCATC
GGCAGCCTCG GAGGACATGC CGAAGCGATC ACGCCGCTTT TCCTCGGTGC CATTGCAAGC
GCACTGGCCG AGACCGACGA CAGCGCCCGG GGCCGGCTGC GCGCGCAGGC CGTCACGCTG
GGGTGCTTCG CGGCGGCGGC CTTCGCGGTG GTGTCGTGGA TCGACCACCC CCTGCTCTTC
GTCCCCGGGC TGGCGCTGGC CGCGTTCGCG CTGACGATGC TGGGCGCGAT CGAGCCCCGC
TACAAGGCCG TCGGCTTTGC GACGCTCGCG CTGGCGATCT ACGCCATGCT GGGCATCGAC
GGCGGCGCGG CCGCGCCGGG CGGCACCGGC CGGTTCGGCG AGGCCCTGTG GCTGCTGGCG
GGCGCCACCT GGTATGGCGT GTTCTCCGTG GCCTGGTGCA CGCTCTTTCC GGCGCAGCCG
GTGCAGGCGC AGCTGGCGGG GCTGTTCCGC GTGCTGGGCG ACTACGTGTG CTTCAAGGCC
TCGCTCTTCG AGCCGCTGCG TGGCATCGAC ATGGAGCGCA AGCGGCTGTC GCTCGCGCAG
CTCAACACGC AGGTGGTGGC CGGGCTCAAC GCGGCCAAGG AAGGCATCTT CCGGCGCATC
GGCAGCACGC GCGCGCCCAC GGGCCGCATC GTGCGCTACC GCGGCCTCTA CCTGATTGCG
CAGGACGTGC ACGAGCGCGC GACCTCCTCG CATGACGACT ACAACGCGCT GGCCGATGCC
TTCTTCCACA GCGACCTGCT CTACCGCTGC CAGCGCGTGC TGACGCTGCA GGGCGAGGCC
TGCCGGCGGC TCGCCGTGTC CGTCGAGCGG CGCGAACCCT TTGCCGCCGA TCCCGCCACC
GGCCACGCGC TCGCGGAGCT GCACAGCGCC ATCGACCACG AGCGCGCGCA GCCATCGCGC
GAACCGCGCC GGCAGGCACT GCTCGGGTCC GTCGAGGCCA TGGCGTGGAA CCTGGCGCAG
CTCGAGCGGC AGCTCGCCGG CGCCACCGAG CCCTCGGCCC GCGCCGGGCG CGCCGACATG
GGCCTGTTCG ACCGCTCGCC GCGTTCAGCG CGCGAGATGG TGGAACGCGT GCGGCGCCAG
TTCACGCCGC GCTCGGCGCT GTTCCGCCAC GCGCTGCGGC TGGCGGTGGC GCTGGTGGCC
GGCTACGGCG TGATGCTGCT GATCCATCCG GTGCGCGGCT ACTGGATCCT GCTGACCACG
CTGTTCGTCT GCCAGCAGGC CTGGGGCGAC ACGGTGTCGC GCGTCGGCCA GCGCGTCGCG
GGCACGGCGA TCGGCGTGGT GGCGGGCTGG GCCCTGCTGG TGCTTTTTCC GCAGCACTGG
GCGCAGTCGC TGCTGGCGGT GGCCGCGGGC GTGTTCTTCT TCGCCACGCG CGCGACGCGC
TACCTGCTGG CGACCGCCGC CGTCACGGTG CTGGTGCTGA TGTGCTTCAA CCAGGTGGGC
GACAGCGACA TGCTGATGCT GCCGCGGCTG ATCGACACCG CCATCGGCAG CCTGATTGCC
GCGCTCGCGA TGCTGCTGGT GCTGCCGCAC TGGCAGGCGC GGCGCTTCAG CGACCTGGCG
GCGGCGGCGC TGCGCAACCA TGCGCACTAC CTGCGGCAGA TCGCGGACCA GTACCGCTCG
GGCGCACGCG ACGACCTGGC CTACCGGCTC GCGCGGCGCA ACGCCCACAA CGCCGATGCG
ACGCTGTCCA CCGCCGTGTT CGAGATGTTC CGCGAACCCG GCTTCGTGCG GCCGCGCGCA
GGCACGGCGC TGCGCTTCCT GATCCAGTCG CATGCGCTGC TGAGCTACCT CTCGGCACTC
GGCGCGCACC GCGTGGCACT GCCTGCACCG CAGCAGCTGG AAGCGCTGCG CGCGGAGGCC
GAGGGTGCCG CGGCGGCGCT GGATGCACTG GCGTCGTACA TGGAAGGCGG CCCACCGGAA
GCCGGCGCCG AGCCCGCGGA TCTTGGGCTG CCGCAAGCAC TGCCCCAGGG AAGCGATGCC
GGCGACCACG CCGCGCGGCT GTTCCGCACC GAGCTCGCGC TGGTCCGCCA GCAGATCGAG
GCGCTGCGCG AACAGGCCGC CCAATGGCTG CAGCCGCAGC CCGAAGGCGC CGCCGGCAAC
TGA
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| Protein sequence | MAGRAQPLRV LLTLGSLMAI GSLGGHAEAI TPLFLGAIAS ALAETDDSAR GRLRAQAVTL
GCFAAAAFAV VSWIDHPLLF VPGLALAAFA LTMLGAIEPR YKAVGFATLA LAIYAMLGID
GGAAAPGGTG RFGEALWLLA GATWYGVFSV AWCTLFPAQP VQAQLAGLFR VLGDYVCFKA
SLFEPLRGID MERKRLSLAQ LNTQVVAGLN AAKEGIFRRI GSTRAPTGRI VRYRGLYLIA
QDVHERATSS HDDYNALADA FFHSDLLYRC QRVLTLQGEA CRRLAVSVER REPFAADPAT
GHALAELHSA IDHERAQPSR EPRRQALLGS VEAMAWNLAQ LERQLAGATE PSARAGRADM
GLFDRSPRSA REMVERVRRQ FTPRSALFRH ALRLAVALVA GYGVMLLIHP VRGYWILLTT
LFVCQQAWGD TVSRVGQRVA GTAIGVVAGW ALLVLFPQHW AQSLLAVAAG VFFFATRATR
YLLATAAVTV LVLMCFNQVG DSDMLMLPRL IDTAIGSLIA ALAMLLVLPH WQARRFSDLA
AAALRNHAHY LRQIADQYRS GARDDLAYRL ARRNAHNADA TLSTAVFEMF REPGFVRPRA
GTALRFLIQS HALLSYLSAL GAHRVALPAP QQLEALRAEA EGAAAALDAL ASYMEGGPPE
AGAEPADLGL PQALPQGSDA GDHAARLFRT ELALVRQQIE ALREQAAQWL QPQPEGAAGN
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