Gene Vapar_5790 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5790 
Symbol 
ID7974911 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp492103 
End bp492633 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content62% 
IMG OID644796371 
Producthypothetical protein 
Protein accessionYP_002947645 
Protein GI239820460 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGATC CCGCTCGAAT CGACTTCCCC TTGCTCACTG AAGAGATTCG CGAAGGTGCT 
CGCCGCGCCT TCCAGGCCAT CCGCGCGGCC CATCCTGACG AGACCATCCG CCTTTTCTCG
CTCGGCAGCG ATGACGGCGC GATGACCATC GTCCATGCTG CCGGCCATCT CGCTTTGGGC
GCTCCGGGCG ACATGGACGA TGAAAGCGAG GTCTGGTGCT CCGCCGAGTG GCCCTACGCG
GAGGGCGGTG AGTTCCTCGA CATCGCCTAC CGCATGATCC TGCCATGCCA CCGCAGCGAC
CTGCCTTGCG ACGTTGAATT CGACGTCCTG TACGCAGGCC TGTTCGAGGC TTGCATTGCC
GCCATGGAAC AACTCGATCG TGAAGGCTTC TTCGGCACCG GCGATGCGCG TGAAGAGGTT
GTGCTGCTAT GCCAGATCGA AGGCAACGAG GATATGGAAG GCTCGATCGG CCGGCTCAAC
ACTTCTCGCG TGGTGGGCCG GCTCGAACGC TGGATCAAGC TCTGCGAATG A
 
Protein sequence
MHDPARIDFP LLTEEIREGA RRAFQAIRAA HPDETIRLFS LGSDDGAMTI VHAAGHLALG 
APGDMDDESE VWCSAEWPYA EGGEFLDIAY RMILPCHRSD LPCDVEFDVL YAGLFEACIA
AMEQLDREGF FGTGDAREEV VLLCQIEGNE DMEGSIGRLN TSRVVGRLER WIKLCE