Gene Vapar_5778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5778 
Symbol 
ID7974899 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp482744 
End bp483574 
Gene Length831 bp 
Protein Length276 aa 
Translation table11 
GC content62% 
IMG OID644796359 
ProductMethyltransferase type 11 
Protein accessionYP_002947633 
Protein GI239820448 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2226] Methylase involved in ubiquinone/menaquinone biosynthesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.537325 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGAATC GAGTCAACCA AGCCATCCAG GCGCATTACG GCCGCCCGGA TGTGGGAAGC 
GTCATTCTGG CGGCCCTGGA AAAGGCGGGC AAAGACCTGG ACCGCCTCAC GCCGGAAGAC
TTGGCACCTG TCGACGAGTT TCATATCCGG GGCCGGGCTG CGACGCTGGA GCTCGCCCGG
GCCGCGGGTC TCGATGCGAA CAAGCGTGTG CTCGATGTCG GCAGCGGTGT TGGCGGAACT
TCGCGCTGCC TTGCAAGGGA GTTCGGTTGC CACGTCACCG GCATTGACCT CACAGACGAA
TACTGCCGCG CCGCTGCAAT GCTCTCTGCC AAGGTCGGCC TGGCGGACCT GGTCGATTAT
CGCCAGGGTG ATGCCACCCA CCTGCCGTTT GATGACGGCG TGTTCGACGT CGTCTGGACG
GAGCACGTGG CCATGAACAT TCCAGACAAA CTCCGGCTGT ACAAGGAGAT GCACCGGGTT
CTGAAGCCGG GCGGCACGCT CGCCATCTAC GACGTATTGG CCGGCCCTTC CGGACCGGTC
CTGTTTCCCG TCCCGTGGGC GCGCACGCCG GATACGAGCT TCCTCGTGCA GCCGGACGAG
TTGCGCAGGC TTCTCGAGAA CGCTGGATTC ACGATTTCCG ACTGGATGGA CACGACCGAG
GCAGCGCGCA CGTGGTTTGT GTCCCTGGCC GAGAAGATCC GCAAGGAAGG CTTTCCGCCG
CTTGGATTCC ATCTGCTCCT CGGGGCCGAC TTTCAGGCGA TGGCACAAAA TCAGGGGCGA
AATCTCCAGG AAGGGCGGAT AGTTCTTGGA CAAGTTGTCG CAAGGAAATA G
 
Protein sequence
MPNRVNQAIQ AHYGRPDVGS VILAALEKAG KDLDRLTPED LAPVDEFHIR GRAATLELAR 
AAGLDANKRV LDVGSGVGGT SRCLAREFGC HVTGIDLTDE YCRAAAMLSA KVGLADLVDY
RQGDATHLPF DDGVFDVVWT EHVAMNIPDK LRLYKEMHRV LKPGGTLAIY DVLAGPSGPV
LFPVPWARTP DTSFLVQPDE LRRLLENAGF TISDWMDTTE AARTWFVSLA EKIRKEGFPP
LGFHLLLGAD FQAMAQNQGR NLQEGRIVLG QVVARK