| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5771 |
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| Symbol | |
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| ID | 7974892 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 475474 |
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| End bp | 476313 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796352 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947626 |
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| Protein GI | 239820441 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAGCA GCACCCACAG AAAACTCGAA GGCAAGGTCG CCATCGTTTC CGGCTCCGGC
CGCGGCATCG GGCGCGAGAT CGCGCTCAAG CTCGCAGGCG ACGGCGCGCG CGTGGTCATC
AACGACCTCG ATGCCGGACC CGCCGCGCAG ACCGTCAATG ACATCGTGGC AGCGGGCGGC
AGCGCCATCG CCTGCCCTGG CAGCGTGACG GACGCCGGCT TTGCCGACCG CTTCGTGCGC
ACCGCGGTCG ACAGCTACGG CGGCCTGGAC ATCGTCGTCA ACAACGCCGG CTACACCTGG
GACAACGTGG TGCAGAAGAT GAGCGACGAG CAGTGGGAAG CGATGCTGGC CGTGCACCTC
ACGGCGCCAT TCCGCATCCT GCGCGCGGCC TCCAGCTTCA TCCGCGATGC GGCCAGGCGC
GAAGCCGACG AAGGCCGCGA GGTGTTCCGC AAGGTGGTCA ACATCTCGTC CACCTCGGGC
GTGTACGGCA ACGCAGGCCA GGCCAACTAC GCGGCCGCCA AGGCCGGCAT CAACGGCCTG
ACCAAGGCCA TGGCCAAGGA ATGGGGCCGC TACAAGGTCA CGGTCAACAG CGTGGCCTTC
GGCCTGATCA AGACGCGGCT GACCGAAGCC GATGCCGGCG CGGGCGCGAG CATCGACATC
GAGGGCCGGC AGATCAAGGT CGGCGTCAAC CCGCAGATCC TCAAGAACGC CGAGGCGCTG
ATCCCGCTCG GCCGCGGCGG CACGCCGCAG GAAGCAGCGG GCGCGGTCTA CCTGTTCTGC
ATTCCGGAGT CGAACTACGT GAGCGGCCAG GTGCTGGTCT GCGGAGGCGG GCGGCCATGA
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| Protein sequence | MNSSTHRKLE GKVAIVSGSG RGIGREIALK LAGDGARVVI NDLDAGPAAQ TVNDIVAAGG
SAIACPGSVT DAGFADRFVR TAVDSYGGLD IVVNNAGYTW DNVVQKMSDE QWEAMLAVHL
TAPFRILRAA SSFIRDAARR EADEGREVFR KVVNISSTSG VYGNAGQANY AAAKAGINGL
TKAMAKEWGR YKVTVNSVAF GLIKTRLTEA DAGAGASIDI EGRQIKVGVN PQILKNAEAL
IPLGRGGTPQ EAAGAVYLFC IPESNYVSGQ VLVCGGGRP
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