| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5764 |
|---|
| Symbol | |
|---|
| ID | 7974885 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 470560 |
|---|
| End bp | 470979 |
|---|
| Gene Length | 420 bp |
|---|
| Protein Length | 139 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644796345 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_002947619 |
|---|
| Protein GI | 239820434 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
|---|
| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCCG TCACCGGTGC GGACCACCGC CACCTGTTCG GCCAGGTGCC GTTCATGCGG
CTGCTGGAGG CGCGCCGCGA GTTCTCCGAA GGCGGCCGCG CGCGCCTCGT CATCGATGCG
CGGCCCGAGC TCGGCAACGT CATCGGCGCC GTGCACGGCG GTGTGCTGGT CACGTTGCTC
GACGTGGCGA TGGCGAGCGC GGCGGTGTCG CTGTTCGGCT TTGCGCGCAC CGCCGTCACG
CTCAACCTCA ACACCAGCTT CCACGCGCCG GGCCGCGGCC GTCTCACGGC CGACGGCGAA
GTGGTGCAGC ACGACGCCAG CGTGGCCTGG TGCCGCGCCA CGGTCAGCGA CGAGGCCGGC
CGCCTGGTCG CGCAAGCGCA AGGGTCCTTC CGCTACCTGC CGCTGCCGCA GGCCGCCTGA
|
|---|
| Protein sequence | MQPVTGADHR HLFGQVPFMR LLEARREFSE GGRARLVIDA RPELGNVIGA VHGGVLVTLL
DVAMASAAVS LFGFARTAVT LNLNTSFHAP GRGRLTADGE VVQHDASVAW CRATVSDEAG
RLVAQAQGSF RYLPLPQAA
|
|---|
| |