| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5763 |
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| Symbol | |
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| ID | 7974884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 469058 |
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| End bp | 470560 |
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| Gene Length | 1503 bp |
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| Protein Length | 500 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796344 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002947618 |
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| Protein GI | 239820433 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTACCTGA CCCAAGGCCT GCATCGCGCG CTCCAACGCA ACCCCGGCAT GGCGGCGCTC
ACCCACGTGG GCGACGCCGG CGTGCGCCGC CAGACGCATG CGCAGATGGC GGACGGCATC
GCGCGGCAGG CGGCCGCGCT GGCCCGGCGC GGCATTGCGC GCGGCGACCG CGTGGCGCTG
CTCGCGCCCA ACAGCGACCA GCTGGTGCGG GCCATCCTCG CGTGCTGGTG GCTCGGCGCC
GTCGCCTGTC CCTTGAACAT CCGCTGGAGC ACGCCGGAGC TCGCACATGC GCTGCAGGAC
AGCCAAGCCT CCTTGCTGCT CGTGCACGAA AGCCTGCGGG CGCTGACGCC GGCCGATGCA
CCCGCACTTG CACAGCTGGA TGCGCTCGAA GAAGAAGGCG CGGCGCTGGA ACCCTTGCCC
GACTCGCGCA CCGGCGGCGA CGCGCTCGCC GCCATCCTCT ACACCGGCGG CACCACCGGC
CGCTCCAAGG GCGTGATGCT GAGCCACGCC AATTTCTGGA CCGCATCGAT GACGCGCGGC
GCCGAACTCA ACAATGCGCC CGATTCCGTC TCGCTGCTGG TGGCGCCGCT GTTCCACGTC
GCCGGGCTCG GCCGCCTGGT GGGCCAGCTG ATCGTCGGCG GCGGCTGCGT GACGATGGCG
CAGTTCCGCC CCGCTGCGGT CATCGACGCC ATCGAGGAGC ATCGCATCGG CGACATCGTC
GTGGTGCCGA GCATGCTGCA ATCGCTGCTC GACGACGCGG CGTTCACGCC CGGGCGCGTG
CGCAGCCTCA CGCGCATCGC CTTCGGTGCG GCGCCGATGC CGCCCGACCT GCTCGACCGC
GCGCTGGAAG CCTGGCCGCA TGCCGAGTTC TTCCAGGCCT ACGGCCTCAC CGAAACCGCG
GGCGCCGTGT GCATCAACCT GCCGTCGAAC CACCGGGCGG AAGCGCGCGC GCTCGGCCGG
CTGAACTCGG TCGGCCGCGC CGGCCTGGGC GCCGAGATCA TCATCGCGGA CGAGAGCGGC
CGCGAACTGC CGCGCGGTGA AGTCGGCGAA GTGCTGGCGC GCGGGCCGAT GGTGATGCAG
GGCTACTGGC GCAACCCCGA GGCCACGGCC GCCGCGCTGC GAGACGGCTG GCTGCGCACC
GGCGATGCGG GCCGCATGCT GCCCGACGGC CACCTGTTCA TCGTCGACCG CCTGAAGGAC
ATGATCATCA GCGGCGGCGA GAACGTCTAC TGCGCCGAGG TGGAGGCCGC ACTGCGCAGC
CATCCGCAGG TGCGGCAGGC GGCGGTCATC GGCGTGCCCG ATGCGCGCTG GGGCGAGGCG
GTGCATGCGG CGGTCGTGCT GGCCGACGAT GCGCGCGCCG ATGCCGATGA ACTGCGCGCC
TGGTGCCGCG AGCGCCTGGC CGGCTACAAG TGCCCGCGGG GCATCAGCTT CCTGCGCGAG
CTGCCGCTGT CGGCCGCGGG CAAGGTGCTG AAGAACGTGC TGCGCGAGCG GCTGCAGGCG
TGA
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| Protein sequence | MYLTQGLHRA LQRNPGMAAL THVGDAGVRR QTHAQMADGI ARQAAALARR GIARGDRVAL
LAPNSDQLVR AILACWWLGA VACPLNIRWS TPELAHALQD SQASLLLVHE SLRALTPADA
PALAQLDALE EEGAALEPLP DSRTGGDALA AILYTGGTTG RSKGVMLSHA NFWTASMTRG
AELNNAPDSV SLLVAPLFHV AGLGRLVGQL IVGGGCVTMA QFRPAAVIDA IEEHRIGDIV
VVPSMLQSLL DDAAFTPGRV RSLTRIAFGA APMPPDLLDR ALEAWPHAEF FQAYGLTETA
GAVCINLPSN HRAEARALGR LNSVGRAGLG AEIIIADESG RELPRGEVGE VLARGPMVMQ
GYWRNPEATA AALRDGWLRT GDAGRMLPDG HLFIVDRLKD MIISGGENVY CAEVEAALRS
HPQVRQAAVI GVPDARWGEA VHAAVVLADD ARADADELRA WCRERLAGYK CPRGISFLRE
LPLSAAGKVL KNVLRERLQA
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