| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5752 |
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| Symbol | |
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| ID | 7974873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 458522 |
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| End bp | 459475 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796333 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
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| Protein accession | YP_002947607 |
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| Protein GI | 239820422 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.144245 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCC AAGTCCTTCA ACTCAATCCG ATCCTGATCC CCGCAGTCAA CGACAAGCTC
GCCTCGCTCT ACGCCGTGCA CAAGCACTTC GAGCTGCCCG ATCCTGAGGG CTGGCTGCGC
CAGCACGGTG CATCGATCGA CGCCGTGATC ACCGGTGGGC ACACCGGCAT TTCGCGCGCC
ATGCTGGAGC AGCTGCCCAG CCTCAAGGTG GTGGCCGTCA ATGGCGTGGG CACCGACGCC
GTGGACCTGG CGTACTGCCG GGAGCGCGGC CTGCCCGTCA CCGCAACGCT GGGCGCGCTC
ACCGAAGACG TGGCCGACCT CGCCATCGGC TTGCTGATCG CGGCCTGCCG CAACCTGTGC
GCGGGCGACC GCTTCGTGCG GGACGGCCAA TGGGAGCGCC ACCCCCAGCC CGGCGCCATT
CCGCTTGCCC GCCGCTTCAG CGGCATGCGC ATCGGCATCG TCGGAATGGG GCGGGTGGGC
CGCGCCGTGG CGGTGCGGGC GGCTGCCTTC GGTTGCCCCA TCCGCTACAC CGACCTGCGC
CCGATGGACG ACGTTGCCTG CAGCTTCATG CCGAGCCTGG TGGACCTGGC GCGCGAATCA
GATGCGCTGG TGCTGTGCGC CGCCGCGGAC CAGGCCGAAG GCATCGTGGA CGCGGCCGTG
CTCGATGCGC TGGGCCCGCG CGGCTTCCTG GTCAACGTCG CGCGCGGCCG GCTCGTGAAC
GAAGCCGACC TCACGCAGGC GCTGGTCGAC GGCCGCATTG CAGGTGCGGG GCTGGACGTG
TTCGTCGACG AACCGCGCGT GCCGCTGGCG CTGCGCCAGT CCGAGCGCAC GACGCTGCAG
GCCCACCGCG CCAGCGCCAC CTGGGAGACC CGCACCGCCA TGGCCGAGAT GGTGCTGGCC
AGCGTTGCCC AGGCCCTGGC CGGCGAACGG CCGGCCATGA GCCTGACCAC CTGA
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| Protein sequence | MKPQVLQLNP ILIPAVNDKL ASLYAVHKHF ELPDPEGWLR QHGASIDAVI TGGHTGISRA
MLEQLPSLKV VAVNGVGTDA VDLAYCRERG LPVTATLGAL TEDVADLAIG LLIAACRNLC
AGDRFVRDGQ WERHPQPGAI PLARRFSGMR IGIVGMGRVG RAVAVRAAAF GCPIRYTDLR
PMDDVACSFM PSLVDLARES DALVLCAAAD QAEGIVDAAV LDALGPRGFL VNVARGRLVN
EADLTQALVD GRIAGAGLDV FVDEPRVPLA LRQSERTTLQ AHRASATWET RTAMAEMVLA
SVAQALAGER PAMSLTT
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