| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5744 |
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| Symbol | |
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| ID | 7974865 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 450445 |
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| End bp | 451749 |
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| Gene Length | 1305 bp |
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| Protein Length | 434 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796325 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947599 |
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| Protein GI | 239820414 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0821476 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCC GACGCCAGCT GCAAGACAAA GTGATCGACC GCACGCACAC CCATGCGCTG
GGCCTCAACC TGCGGCACCT GCGCGCGTTC ACGGCCGTGG CGGCGGCCGG CAGCATCGCC
AGGGCCGCGG ACGAGCAGCT GTTCCGCGTC GCCTCGGGCG TGACGCGCTC CATTTCCGAG
CTCGAAGGCG CGCTCGGCCG GCCGCTGTTC GACCGCGGCC CGCGCGGCAT GGCGCTGAAC
TCCTACGGCG ACCTGGTGCT GCTGCGCGCG CGCCGCATCG AGCGCGAGTT CGAGGAGGCG
CGCGCCCAGC TCGTCGCGCG CGGCGGCATC GGCGCATCGG CCGACGTGCA CTCGCTCTTT
GCATCGATCC TCAACGGCCG GCGCCTCGCG GTGATCGCGA GCCTGGTGGA GAAGCGCAAC
ATGCCGGCGG TCGCGCGCGA GTTCGGCATC ACGCAGCCGG CGATCAGCAG CGCGCTGAAG
GACCTCGAAG GCGGGCTCGG CGTGGCGCTG CTCGAGCGCC GGACGCGAGG CCTGGTGCCC
ACGCCGGCCG GCGAGATGGT GGCCTTCCAT TTCAAGCGCG TGCTCGCGGA GCTGCGCCAC
ATCGGCCCCG ACATCGCGGC CAGCGAAGGC ATGCTGCAGG GCAGCGTGAA CGTGGGGGCG
CTGCCGCTCG GCCGCACGCA GATACTGCCG CAAGCGATCG CCTCGCTGCT GGCGCGCCAT
CCGGGGCTGC ACGTCGCCAC GGTCGAAAGC CCTTACGACG CGCTGGCGGC GTCGCTGCGC
AGCGGCGACA TCGACTTCAT CCTCGGCGCA CTGCGCAGCA GCGCCGACGC GCGCGACCTG
CAACAGGAGG CGCTGTTCGA AGACCGCATC TCGGTGATCG CGCGCGCCGG CCATCCGCTG
GCGCGCGGCG TGCGTGTCGA CTTCGATGCG CTGCGTCAGG CGAGCTGGGC ACTCTCGCGG
CAGGGCACGC CTTCGCGCGA GCTGCTCGAG CGCTTTTTCT CGGCCGCGCG CGAAGCGCCG
CCGGTTCCCG CGGTGGAGAC CGGCGACCTT GCCGTGCTGC GCGGCCTGCT GCTCGCAAGC
GATATGCTGA CCGCGATCTC CGCCCACCAG CTGCGCCACG AGATCCGCAA TGCCAGCCTG
GTGGTGCTGG ACTTTCCGCT CGACGAGACG CGGCGCGAGA TCGGCCTCAC CCAGCGCCTC
GGCGCGTTCC CCTCGCCCGG TGCGCGCGCG CTGATGCAGG AGATCCGCGC GGTGGTCGCC
CGCTCGCCCG ACTTCCGGGC CAAGCCCGCG AACCGCCGCC GGTGA
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| Protein sequence | MTGRRQLQDK VIDRTHTHAL GLNLRHLRAF TAVAAAGSIA RAADEQLFRV ASGVTRSISE
LEGALGRPLF DRGPRGMALN SYGDLVLLRA RRIEREFEEA RAQLVARGGI GASADVHSLF
ASILNGRRLA VIASLVEKRN MPAVAREFGI TQPAISSALK DLEGGLGVAL LERRTRGLVP
TPAGEMVAFH FKRVLAELRH IGPDIAASEG MLQGSVNVGA LPLGRTQILP QAIASLLARH
PGLHVATVES PYDALAASLR SGDIDFILGA LRSSADARDL QQEALFEDRI SVIARAGHPL
ARGVRVDFDA LRQASWALSR QGTPSRELLE RFFSAAREAP PVPAVETGDL AVLRGLLLAS
DMLTAISAHQ LRHEIRNASL VVLDFPLDET RREIGLTQRL GAFPSPGARA LMQEIRAVVA
RSPDFRAKPA NRRR
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