Gene Vapar_5722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5722 
Symbol 
ID7975775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand- 
Start bp435217 
End bp435666 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content67% 
IMG OID644796303 
Product3-dehydroquinate dehydratase 
Protein accessionYP_002947577 
Protein GI239820392 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0757] 3-dehydroquinate dehydratase II 
TIGRFAM ID[TIGR01088] 3-dehydroquinate dehydratase, type II 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGATCC TCGTCCTGCA CGGCCCCAAC CTCAACCTGT TCGGCCGCCG CGAACCCCAC 
ATCTACGGCA CCACCACGCT GGCCGAGATC GACGCCATGC TGCACAAGCT CGCGGGCGAA 
CTCGGCGCCA CGCTGGAGAC CATCCAGTCG AACCACGAAG GCGTGCTGGT GGACTTCCTG 
CACACGCACA TCGATGATGC GCAGGGCGCG CTGGTCAATC CGGCAGGCCT CACGCAGCAC 
GGCGTTCCGC TGCACGACGC GATCAAGGCC ATGCCGTTTC CGACCATCGA GGTGCACATG 
TCGAACATTG CGGCGCGCGA GGCCTGGCGC GCGCACTCGA TCATCTCGCC GGCCGTCAAG 
GGCACGGTCC AGGGCCTGGG GCCGCAGTCG TACCTGGCCG CGCTGCGCGC GCTGGTCGAG 
ATGCAGCAAA GGCAACCGGC CGGCGCTTGA
 
Protein sequence
MKILVLHGPN LNLFGRREPH IYGTTTLAEI DAMLHKLAGE LGATLETIQS NHEGVLVDFL 
HTHIDDAQGA LVNPAGLTQH GVPLHDAIKA MPFPTIEVHM SNIAAREAWR AHSIISPAVK 
GTVQGLGPQS YLAALRALVE MQQRQPAGA