| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5711 |
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| Symbol | |
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| ID | 7975764 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 425474 |
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| End bp | 427201 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796292 |
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| Product | dihydroxy-acid dehydratase |
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| Protein accession | YP_002947566 |
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| Protein GI | 239820381 |
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| COG category | [E] Amino acid transport and metabolism
[G] Carbohydrate transport and metabolism |
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| COG ID | [COG0129] Dihydroxyacid dehydratase/phosphogluconate dehydratase |
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| TIGRFAM ID | [TIGR00110] dihydroxy-acid dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0870654 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCACGTT CCTACGACAC CCTGCGCAGC GCCCGCTGGT TCGCGCCCGA CGACTTCCGC
TCCTTCGGCC ACCGCTCGCG CGTGATGCAG ATGGGCTATG CGCCCGCCGA CTGGGTCGGC
AAGCCGATCA TCGCCATCGT CAACACCTGG AGCGACGCCA ACCAGTGCCA CTCGCACTTC
AAGCAGCGCG TGGACGACGT CAAGCGCGGC ATCTTCCAGG CGGGCGGCTT TCCGCTCGAG
CTGCCGGCCA TTTCGCTCTC GGAGAGCATG GTCAAGCCCA CCACCATGCT CTACCGCAAC
TTCCTCGCGA TGGAGACGGA AGAACTCCTG CGCAGCCATC CGGTGGACGG CGCGGTGCTG
ATGGGCGGCT GCGACAAGAC CACGCCGGGC CTCACGATGG GCGCGCTCTC CATGGGGCTG
CCGTTCATCT ACCTGCCGGC CGGCCCGATG CTGCGCGGCA ACTGGCGCGG ACAGGTGCTG
GGCTCGGGCT CGGACGCCTT CAAGTACTGG GACCAGCGCC GCGCCGGCCA GCTGAGCGAC
CAGGCCTGGC AGGAGATGGA AGCGGGCATC GCGCGCAGCC ACGGCACCTG CATGACCATG
GGCACCGCCG CCACCATGAT GGGCATCGCC GAGGCCGTGG GCTTCACGCT GCCGGGCGCT
TCGAGCATTC CGGCGGCCGA TGCCAACCAC GTGCGCATGA GCGCCGAGTG CGGCCGCCGC
ATCGTCGAGA TGGTGTGGGA CGACCTCACG CCCGCCCGCA TGCTCACGCG CGCCAACTTC
GAGAACGGCA TCGCCTGCGC GATGGCCATG GGCTGCAGCA CCAACGCCAT CGTCCACCTG
ATCGCCATGT CGCGCCGCGC CGGCCATCCG GTCACGCTGG ACGACTTCGA TGCGGCGAGC
CGCCGGGTGC CGGTGGTGGC CAACATCCGG CCGAGCGGCG ACACCTACCT GATGGAAGAC
TTCTTCTATG CGGGCGGCCT GCCCGCGATG CTCGAGCGCA TCCGCGGCCA CCTGAAGACC
GAGGCGCGCA CGGTCAACGG CCGCACGCTC GGTGAGAACA TCGTGGGCGC CGAGGTGTTC
AACGACGACG TCATCCGCCC GCTCGCCAAC CCCATCTATG CCGAAGGCGC GCTGGCCGTG
CTGCGCGGCA ACCTCGCGCC CGACGGCGTG GTGATCAAGC CCAGCGCCTG CGCGCCGCAC
CTGCTGCAGC ACACCGGGCG CGCGCTGGTA TTCGACGACT ATCCGGCGCT CAAGCAGGCG
GTGGACGATC CCGCGCTCGA CGTGACCGGC GACGACATCC TGGTGCTGCG CAACGCCGGC
CCCAAGGGGG CGGGCATGCC CGAGTGGGGC ATGCTGCCGA TCCCGACCAA GCTGCTGAAG
CAGGGCGTGA AGGACATGCT GCGCCTGTCG GATGCGCGCA TGAGCGGCAC CAGCTACGGC
GGCTGCCTGC TGCACTGCTC GCCCGAGGCG GCCGTGGGCG GGCCGCTGGC ACTGGTGCGC
ACGGGCGACC GCATCACGGT GGACGTGCCC GCACGCACCA TCCATCTCGA GGTGAGCGAC
GAGGAACTGG CCCGCCGCAA GGCCGCCTGG ACACCGCCGC CTGCGCGCTA CGAACGCGGC
TACGGCTGGA TGTTCGGCCG CCACATCCTG CAGGCCAACG AGGGCTGCGA CTTCGACTTT
CTCGAAACCA CCTTCGGCCG GCCGGTGCCC GAGCCGGACA TCTTTTGA
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| Protein sequence | MPRSYDTLRS ARWFAPDDFR SFGHRSRVMQ MGYAPADWVG KPIIAIVNTW SDANQCHSHF
KQRVDDVKRG IFQAGGFPLE LPAISLSESM VKPTTMLYRN FLAMETEELL RSHPVDGAVL
MGGCDKTTPG LTMGALSMGL PFIYLPAGPM LRGNWRGQVL GSGSDAFKYW DQRRAGQLSD
QAWQEMEAGI ARSHGTCMTM GTAATMMGIA EAVGFTLPGA SSIPAADANH VRMSAECGRR
IVEMVWDDLT PARMLTRANF ENGIACAMAM GCSTNAIVHL IAMSRRAGHP VTLDDFDAAS
RRVPVVANIR PSGDTYLMED FFYAGGLPAM LERIRGHLKT EARTVNGRTL GENIVGAEVF
NDDVIRPLAN PIYAEGALAV LRGNLAPDGV VIKPSACAPH LLQHTGRALV FDDYPALKQA
VDDPALDVTG DDILVLRNAG PKGAGMPEWG MLPIPTKLLK QGVKDMLRLS DARMSGTSYG
GCLLHCSPEA AVGGPLALVR TGDRITVDVP ARTIHLEVSD EELARRKAAW TPPPARYERG
YGWMFGRHIL QANEGCDFDF LETTFGRPVP EPDIF
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