| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5703 |
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| Symbol | |
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| ID | 7975756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 417588 |
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| End bp | 418955 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796285 |
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| Product | extracellular solute-binding protein family 1 |
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| Protein accession | YP_002947559 |
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| Protein GI | 239820374 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCTCC TGCAATCCCC CGCCGTCGAC ACGCAGCGCC GCCGGTTGAT CAAGGCCGCG
GCCGCCACGG CGGTGGCCGG CGCCGGCAGC GCGCTGGCCT TTCCCGCCAT CGCGCAGGCC
AAGCCCTTTG CCGGCCTCAA GCTGCGCGGC GCGGCGTACC AGCACGGCTT CTTCAACATC
CTGCGCAAGT ACATCCCGGA GTTCGAGCAG CAGACCGGCA TGACGGTCGA CCTCCAGCTG
TCGGCTTTCC CGGTCTACAA CCAGCAGGCC GACCTGGAGC TGTCCTCGGG CGGCAGCGCC
TGGGACTTCT GCAACGTCAC CTTCATCCTT GCCGCGCGCT GGGTCGCGGC CGGCCTGCTT
GCCAACCTGA GCGACTTCGC AGCCGACCGC AAGCTCACTC CCGCCAGTTG GAACCCGGAC
GACTTCGTCA AGGGCGCGCA GCTGCCGTAC CTCGACAAGG CCGGCAAGGC CTACGGTTTC
GCATGGGAAG GCGGCGCGAT GCTCATGGGC ATGAGCCGCA CCGACCTGAT GAAGAAGCGC
GGGGTCGAGG CGCCGCAGAC CTTCGACGAG CTGATGAAGG TCTGCGAGGC GGTGCACGGC
CAGGACGGCG TGACGGGCTT CGTGAGCTCC AACCTGCACC ACTGGTTCCT GCCGCCGTAC
ATCCACGGCT TCGGCGGCGA CCTGTTCGCG AATCCGCCCG CGGACATCAA GCCCACGCTC
GACTCGGCCG CGGCGGTGCA GGCGGCGGGC TTCTATTCGA CGCTGCTGTC CAAGTACAGC
CCGCAGGGCG TGCTCGGCTA CACCGAGGAT CAGGCGCGCG CCGCGCTGAT CGGCGGCCGC
TCGAACATCT TCATCCATTC GAGTTCCTGG GTCACGGCAA TGCTGAGCTC GCCGGAGAGC
AAGGTGAAGG ACACCGCGCG CGTGGTGCGC ATGCCAGCCG GGCCGAAGGG CGACTTTCCC
GCCGCCAACA GCCAGGGGCT GGGCATTCCG AAGAACGCGA AGAACAAGGA AGCGGCCTGG
GAGTTCATCA AATGGGCGCT GAGCCCCGAG CTCACCGCGC GCATCGTGAA GGACACCGGG
CATCCGTCGA TCTGCCGGCG CTCGGTGATC GAAAGCGCCG AGTACAAGCG CATCAACACC
ATCAACGGCC AGGACATCGG CAAGCTCTAC CTCGAAGTGC TCGAGCAGCC CGGCAAGACG
CGCAACTACA TGGCGTACCG CACGGTCAAG GAGTTCCCGC TGGTGGGCGA CGTGCTGAAC
AAGGCCGTGG AGCGCGTGGT CTCGGGCCAG GCGCCGGCCG CGGATGCCAT GAAGACGGCG
CAGGAGGCCG CGCTCGGCAG CCTGCGGCGC GCCGGAGCCA AGGTATGA
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| Protein sequence | MSLLQSPAVD TQRRRLIKAA AATAVAGAGS ALAFPAIAQA KPFAGLKLRG AAYQHGFFNI
LRKYIPEFEQ QTGMTVDLQL SAFPVYNQQA DLELSSGGSA WDFCNVTFIL AARWVAAGLL
ANLSDFAADR KLTPASWNPD DFVKGAQLPY LDKAGKAYGF AWEGGAMLMG MSRTDLMKKR
GVEAPQTFDE LMKVCEAVHG QDGVTGFVSS NLHHWFLPPY IHGFGGDLFA NPPADIKPTL
DSAAAVQAAG FYSTLLSKYS PQGVLGYTED QARAALIGGR SNIFIHSSSW VTAMLSSPES
KVKDTARVVR MPAGPKGDFP AANSQGLGIP KNAKNKEAAW EFIKWALSPE LTARIVKDTG
HPSICRRSVI ESAEYKRINT INGQDIGKLY LEVLEQPGKT RNYMAYRTVK EFPLVGDVLN
KAVERVVSGQ APAADAMKTA QEAALGSLRR AGAKV
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