| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5681 |
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| Symbol | |
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| ID | 7975734 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 390078 |
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| End bp | 394907 |
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| Gene Length | 4830 bp |
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| Protein Length | 1609 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796264 |
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| Product | RHS protein |
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| Protein accession | YP_002947538 |
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| Protein GI | 239820353 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGACC AGGCCCCCCA GAACGACGCG CAAGCCAAGG AGCGCGAGCG CCAGACCGCG
GTGGCACCGC TCAACACCAT CGGCGAGGAA GACATCGGCG CCGGCGCCGC CAAGATCGAC
AAGTGGCTGC GCAAGCTCAC CAACGACTAC GTCACGCTGA ACGTGCTGGC AACCTTCGCG
GGCAGCCTGC CGGTCATCGG CAACATCATG GCGCTCATCG ACGCGGTCTG GGACCTCATC
GAGATGGTCA CCAAGAAGGC GTACAGCGAC GTGCTGCAGT GGGTCAGCCT GGCCATCAAC
CTGCTGGGCG TGATCCCGTT TCCGCCCGCC ACCGGCGCAG CGCGCATGAG CCTGCGGCCC
ATGCTGCACC TGCTCAAGCA GGAGATCGCC AAGTCGGCCA AGAACGCGGT GCCGAACATC
GGCGAGGCGT TCATTGCCGT GCTCATCACG CACCTGAACG ACACCATCGC CGGCACGCTC
GACAAGTTCG TGGACGAGGC GCTCGGCTAC CTCGACGACT TCCTGCAGTC CTGCGCAAAA
AAGGTCGACG GCATCGCCGA TGCGCTGATC GGCGCGCTGC AGGTGGCGCT GGGCGAGAAG
CCGGTGTTCG CAACCGGCGC CGCTGCCGAG CGGAACACCT ACGACCCCAA GACCCAGAGC
ACCTGGAGCC GCATGATGGC CGCCGCGGCC GAGGCCGCGA AGAAATCCGC CAACTACGCG
GCGGCCACCG CGAGCCACTA TGCGCTGCCC GACAGCGCCA AGGCCATGAT CCGGGACACC
GTCGCCAGCC TGACCGACCT CAAGGGCGCG GCCCGCCGGC AGATCATGCG GCTGGGCGAC
GAGAGCCTGC AGTACGGCAT CAAGTGGATG ATCAAGATCC TCAAGGATGC ATTGCTCAGG
CGCAAGGGAA AGCACAGCGC CAACATTTCC GCGAACAACG GAACGCAGGT CGAAAGCAAG
AAGCCCGGCG GCGAACAGGC CGCCACCTCC GCCCAGGTGC CAGCCGGCGG CGACCCCGGC
TGCAAGAACT GCACGAGCGC CGCCGCGGGC GGCGCCATCA GCCTGGCCAC CGGCTGCGAG
AGCTTCGACC ACACCGACTT CGTGCTGGGC GCCCCCCTGC CCATCACCTG GACGCGCACC
TACCGCAGCG ATCTTGCCGC CTTCGACCAG GGCAGCCTCG GCGCGCGCTG GATCACGCCC
TTCAGCACGC GCGTCGATGT TGCCAAGCCC GCCAGGGGCC GCCGCCAGGG CCAGATGAGC
CTGATCTATC GCGGTGCCGA CGGCCGCAGC CACGCCTTCC CGCTGCTGGC CGTGGGCCAG
AGCCATCGCA ACCCGATCGA GGAGATCACC CTCACCCGCC TCGGCGAACG GCTGCTCGCG
GTCGATTTCG GCAAGCCCAT GCCGGCCGGC CAGGCCCCCG ACTGGCGCGA GACCTACGAG
CTGGTCGACA CCGTGCCCGC CAAGGCCGCC GCGCAAGGCA AGCAGCACTT CCGGCTGGTG
GCGCAGCACA CGAACAGCGG CGCCGCCGTC GGCCTGCGCT ACGACCACGT GATCGCGGCC
ACCGGCGAGC AGGTGCTCAG CGACATCATC AGCAGGCAGG GCGAGGCCAT CATCGCCCAT
GTCGGCACCC AGCCCGATGC GCAGACCGGC CTCATCAAGG CCCTGTGGGA GCTGAAGGAA
GGCCGCGTCG TGCGCCAGCT GGCCGCCTAC ATCCACGACG CCGAAGGCGA CCTCGTCGCC
GCGCAGGACG AGAACGGCGC CGGCTGGCAG TACAGCTACA GCCACCACCT CGTCACCCGC
TACACCGACC GCACCGGCCG CGGCATGAAC CTGCAGTACG ACGGCACCGG CGCCGATGCC
AAGGCCGTGC GCGAATGGTC CGACGACGGC AGCTTTGCGC TCACGCTCGA GTGGGACAAG
AACATCCGCC TCACCTACCT GACCGACGCC ATGGGCGGCG AGACCTGGTA CTACTACGAC
GTGCTCGGCT ACACCTACCG GATCATCCAC CCGGACAAGC GCGAGGAATG GTTCCTGCGC
GACGACGCCA AGAACATCAC GCGCCACATC CACACCGACG GCACCACCGA CGACTACGTC
TACGACGCCC ACGGCAACCT CAAGACCCAC ACCCGCGCCG ACGGCAGCAG CGTGCACTAC
GCCTACGACG CGCGCCACCG CATCACCGGC ATCCTCGACG CCGAAGGCGG CGCCTGGAAG
CGCGACTACG ACGCAAGCGG CAACCTCACC GAAGAGATCG ACCCGCTCGG CCACAAGACC
GAATACGCCT ACGACAACGC CGGGCGCCCC GTGCGCATCA CCGACGCCAA GGGCGGCATC
AAGACCCTCG CCTACACCCC CGACGGCCAG CTGGCCAGCC ACACCGACTG CTCGGGCAAG
ACCACCCAGT GGGCCTACGA CGGCCGCGGC CGCCTGGCCA GGATCACCAA CGCCCTGGGC
CAGGCCACGC GCTTTCGCTA CACCGAAGCC GGCGAAGCCG CGCAGTCCGC GATGCCCGGC
CAGGCCAACA ACCACCCGGG CCAGCTCGAG GAGATCGTCC ACCCCGACAA CACCAGCGAG
TACTTCGCGC ACGACGCCGA AGGCCGCCTG CTCGCGCACA CCGATGCGCT GGGCCGCCGC
ACCAGCTACG GCTACACCCG CGCCGGCCTC GTCGCCCAGC GCACCGATGC GGCCGGCCAC
ACCCTCAAAT ACCACTGGGA CCTGCTGGGC CGCCTGCGCG AACTGCACAA CGAGAACGGC
AGCCGCTACG ACTTCCGCTA CGACCCCGTC GGCAAGCTGC TCGAAGAAAC CGGCTTCGAC
CGCAAGGGCA CCCAGTACCG CTACGACGAA GCCAGCGGCG TGCTGGCCGA GGTCATCGAA
GCCGGCCACA GCACCCGGCT CGCGTTCGAC CCCCTGGGCC GCCTGAGCGA GCGCCAGGCC
GGCGACGATG CCGAGCGCTT CGCCTACGAC CGCAACGGCC GCCTGGTCGA GGCCACCAAC
GCCGAGGCCA GGCTCCAGTG GTTCTATGAC CGCGCGGGCA ACCTCGTGCG CGAGCACCAG
CACTACCTGG ACCACGGCCA CACGGCCGTC TGGCAGCACG GCTACGACGA GCTCAACCAG
CGCATCGCCA GCATCCGCCC CGACGGCCAC GTCACCCAAT GGCTCACCTA CGGCTCCGGC
CACGTGCACG GCCTGCTCGT GGACGGCCAG GACATCCTGG GCTTCGAGCG CGACGACCTG
CACCGCGAGA TCGGCCGCGA ACAGGGCAAC GGGCTGACGC AGAAGCTGCA CTACGACCCG
GCCGGCCGGC TGCTGGAGCA GCAGATTTCG CAGACCAGGC CCGGCGCGAT CGAGGCCGTC
GGCATCCGCC GCAGCTATGC CTACGACAAG GCGGGGCAGC TGGTGGCCAT CGGCGACAGC
CGCCGCGGCA ACCTGAGCTA CCGCTACGAC CCCGTGGGGC GCCTGCTGGA AGCCCACAGC
CGCCTGGGAC GCGAGACCTT CGCGTTCGAT CCGGCGGGCA ACATCGGCAG TCCATCCGAC
GTCGGAGCCG ACACCCAAGC CGCAGGTCGC ATGACCACCC GCGTCGCGGT GCGCCTGGGC
GGTGATGGCC GCAGCATGGC CGGTCGGCTG ATGGACAACC TGCTCAAGGA CTATGCGGGC
ACCCACTACA CCTGGGACGA GCGGGGCAAC CTGATCGAGC GCAGCCGCAA CGGAGAAATC
ACCACCTTCA CCTGGGACGG CTTCAACCGC ATGCGCAGCG CCGAGACCTT CGGTGAGACC
ACAAGCTTCA GCTACGACGC GCTGGGCCGG CGCATCGCCA AGCGAAGCTC TCACGCGACG
ACCTTGTTCG GCTGGGACGG CGACACGCTG GCCTTCGAGA GCACGCAGAG CACCGAGGGC
CAGCAGGAGC TGCAGGCCTG GCGCGGTGAC AGCGTGCACT ACATCCACGA GCCCGGCTCC
TTCGTGCCGC TGGTGCAGAT CAGGCAGGCC CAAGCCGTGG CGCTGAGCCA GACCACCGAC
GTGAAGGCGC TGATCGCGGC CAATGGCGGG CGCTACGACA TCGAGCAGGA TCCGTTATGG
AATGGGGAGC AACTCAAGAC GCCGCAGGCC TTTGCGAGAG AAGAGATCGC GTTCTACCAA
TGCGACCACT TGGGCACGCC GCAGGAGCTG ACGGACCATG AGGGGCGGAT CGCCTGGTCT
GCGCAATACA AGGCCTGGGG CGAAGCCAAG CAGGCGATCA GCGAGGCGGG ACGGAAGGCG
GGGTTCAGGA ATCCGATTCG GTTCCAGGGG CAGTACTTTG ACGACGAGAC GGGGCTGCAC
TACAACCGAC ACCGGTATTA CGACCCGAGT TGCGGGCGGT TTGTCTCGAA AGATCCCATC
GGACTGGCCG GCGGGAGCAA TCTCCAGCAG TACGCCCCCA ATCCACTCGG TTGGATAGAC
CCGTTGGGAC TGGCCGGTAA GGGAATTACA CCGAACAACA AGGGAACTCG TACCACTATT
GAAGGAGGCA ATCTGCCTCA ACCAGTTGCC GGATATAGCA CAAAAGCGGG CGGAAATGGC
GCCTCCCATC CTGTTGTTCG AGACCTGTAT GACTCTGTTC CTCGAGATGA ACGATCCGTC
TTCCACGGTG ATTGCGGCGA GGCAGACGCA TTGAGCAAAA TTGCATCGTT AAATAATGCT
AAAAGCATCG AGCAGCTACA AGCTCTCACC AACGGAAGTG CCACCGAAAC ACTTAGAAAT
GATGGAAAAC TTATGGTGTG CTGTTCTTCT TGCAGGCACG TAACAGGAAC TCTCGGAATT
CGAGATAATG CAAGGAATCG AGGAAAATGA
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| Protein sequence | MADQAPQNDA QAKERERQTA VAPLNTIGEE DIGAGAAKID KWLRKLTNDY VTLNVLATFA
GSLPVIGNIM ALIDAVWDLI EMVTKKAYSD VLQWVSLAIN LLGVIPFPPA TGAARMSLRP
MLHLLKQEIA KSAKNAVPNI GEAFIAVLIT HLNDTIAGTL DKFVDEALGY LDDFLQSCAK
KVDGIADALI GALQVALGEK PVFATGAAAE RNTYDPKTQS TWSRMMAAAA EAAKKSANYA
AATASHYALP DSAKAMIRDT VASLTDLKGA ARRQIMRLGD ESLQYGIKWM IKILKDALLR
RKGKHSANIS ANNGTQVESK KPGGEQAATS AQVPAGGDPG CKNCTSAAAG GAISLATGCE
SFDHTDFVLG APLPITWTRT YRSDLAAFDQ GSLGARWITP FSTRVDVAKP ARGRRQGQMS
LIYRGADGRS HAFPLLAVGQ SHRNPIEEIT LTRLGERLLA VDFGKPMPAG QAPDWRETYE
LVDTVPAKAA AQGKQHFRLV AQHTNSGAAV GLRYDHVIAA TGEQVLSDII SRQGEAIIAH
VGTQPDAQTG LIKALWELKE GRVVRQLAAY IHDAEGDLVA AQDENGAGWQ YSYSHHLVTR
YTDRTGRGMN LQYDGTGADA KAVREWSDDG SFALTLEWDK NIRLTYLTDA MGGETWYYYD
VLGYTYRIIH PDKREEWFLR DDAKNITRHI HTDGTTDDYV YDAHGNLKTH TRADGSSVHY
AYDARHRITG ILDAEGGAWK RDYDASGNLT EEIDPLGHKT EYAYDNAGRP VRITDAKGGI
KTLAYTPDGQ LASHTDCSGK TTQWAYDGRG RLARITNALG QATRFRYTEA GEAAQSAMPG
QANNHPGQLE EIVHPDNTSE YFAHDAEGRL LAHTDALGRR TSYGYTRAGL VAQRTDAAGH
TLKYHWDLLG RLRELHNENG SRYDFRYDPV GKLLEETGFD RKGTQYRYDE ASGVLAEVIE
AGHSTRLAFD PLGRLSERQA GDDAERFAYD RNGRLVEATN AEARLQWFYD RAGNLVREHQ
HYLDHGHTAV WQHGYDELNQ RIASIRPDGH VTQWLTYGSG HVHGLLVDGQ DILGFERDDL
HREIGREQGN GLTQKLHYDP AGRLLEQQIS QTRPGAIEAV GIRRSYAYDK AGQLVAIGDS
RRGNLSYRYD PVGRLLEAHS RLGRETFAFD PAGNIGSPSD VGADTQAAGR MTTRVAVRLG
GDGRSMAGRL MDNLLKDYAG THYTWDERGN LIERSRNGEI TTFTWDGFNR MRSAETFGET
TSFSYDALGR RIAKRSSHAT TLFGWDGDTL AFESTQSTEG QQELQAWRGD SVHYIHEPGS
FVPLVQIRQA QAVALSQTTD VKALIAANGG RYDIEQDPLW NGEQLKTPQA FAREEIAFYQ
CDHLGTPQEL TDHEGRIAWS AQYKAWGEAK QAISEAGRKA GFRNPIRFQG QYFDDETGLH
YNRHRYYDPS CGRFVSKDPI GLAGGSNLQQ YAPNPLGWID PLGLAGKGIT PNNKGTRTTI
EGGNLPQPVA GYSTKAGGNG ASHPVVRDLY DSVPRDERSV FHGDCGEADA LSKIASLNNA
KSIEQLQALT NGSATETLRN DGKLMVCCSS CRHVTGTLGI RDNARNRGK
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