Gene Vapar_5680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5680 
Symbol 
ID7975733 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp387098 
End bp390025 
Gene Length2928 bp 
Protein Length975 aa 
Translation table11 
GC content71% 
IMG OID644796263 
Producttype VI secretion system Vgr family protein 
Protein accessionYP_002947537 
Protein GI239820352 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.555449 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAGCGCC GCGTCACCAT CCAGACGCCG CTGGGCGAGG CACTGCAATT CCACCGGCTG 
GCGGGGCGCG AGGCGCTCAG CCAGGCCTAC GCCTTCGACC TGGACCTGCT GGGCAGCAGC
AATGCGCTGG ACCCCAAGTC CATCCTGGGC AAGCCCGCCA CCGTCGTGAT GGAGACCGAG
AGCGGCGTGC GTCACCTTGG CGGCCTCGTC ACCCGCTTCG GCCTGTCGCA CGAAGACGAC
CGCCAGGCCT TCTACAGCAT GCGGCTTCGC CCGTGGCTTT GGCTGGCCAC GCGCCGCTCC
GACTTCCGCA TCTTCCAGGA CCAGACCGTG CCCGAGATCG TTGCGGCCGT GCTGGGCCGC
TACGGCCATC CGATGGAGCA GAAGCTCCAC CGCAGCTACC GCCCCTGGAC CTACTGCGTG
CAGTACCGCG AGAGCGACTT CGACTTCATC TCGCGCCTGT GCGAGCACGA AGGCATCTAC
TTCTGGTTCA GACACGAAGC GGAGCAGCAT GTGCTGGTCT TCGCCGACGA CATCGCCGCC
TCCCACGCCC CGCTGCCCGG CGGCGAGACC GTGCGCTACC ACCCGCACGA GAAAGCCGGC
ATGACCGGCG GGCTGGAGGC CAGCGAGCGC ATCTACGAAT GGGCGCAGGC CGAGGAGATC
CGCCCCGGCC ATCACTTTCG CAACCACTAC GACTTCGAGA AGCCCCAGGC CGACCTCGCC
AGCCGGCGCC AGATGCCGCC GGGCCACGAG CACGACGGCT TCGAGCAGTA CGAATGGCCG
GGCGACTACC TGCAGCACGA CGACGGCGAG ACCTACGCGC GCCTCCGCAC CGAAGAGCAA
CTGAGCCAGC GCAGCCGGGT CAGCGGCCGT TCCAACCTGC GCGAACTGGC GCCGGGCCAC
ACCTTCCGCC TGCGGGACCA TCCGCGCGAG GACCAGAACC GCCAGCACCT GCTGCTGGCC
GTGGACTACG ACCTTCAGGA GAACCTGCAG GCCAGCGAAG GCGCCAATGC CTCCGAAGGC
TCGGTGCAGC GCTTTGCCTT CGAGGCCCAG CCCACCAGCT ACGCCTGGCG CCCGCGCCGC
AGCACGCCCA AGCCCCGCAC CCGCGGCCCG CAGACCGCCG TGGTGGTCGG CCCGGCCGGC
GAGGAGATCT GGACCGATCC CTACGGCCGC ATCAAGGTGC AGTTCCACTG GGACCGCCTG
GGCCAGCGCA ACGAGAATTC GAGCTGCTGG CTGCGCGTGT CCACCGCCTG GGCCGGCGCC
ACCTTCGGCG CGGCCGCGCT GCCGCGCATC GGGCAGGAGG TGATCGTCGA CTTCCTGAAC
GGCGATCCCG ATTATCCGAT CGTCACCGGC CGGGTGCACA ACGCCGACGA GATGCCCGCC
TGGCAACTGC CTCAGCAGAA GCAGCTCACC GGCATCCGCA GCCGCGAGCT CGGCGGCGGC
AAGAGCAACC ACCTCGCGCT CGACGATTCG AGCGGCAAGG TGCAGGCCCA GCTCAAGAGC
GACCACCAGA GCACCAGCCT GAGCCTGGGC CACATCGGGC GCATCGAGGA CACGGCCGGG
CGCAAGGACG ACCGCGGCCA GGGCTTCGAG CTGCGCACCG ACGGGCATGG CGCCGTGCGC
GCCGCCCGCG GCCTGCTGCT GAGCACCGAG GCGCGGCCCA ATGCGCAGGG CCACATCACC
GACATGCGCG AGACCATCGC CAGGCTCACC GAGGGGCGCG ACCTGCACGA GAGCCTGGCG
CAGGTGGCGC AGCAGGCCAA GGCTCACGAG GCCGGCGACC AGGACGAGGT GGCCCGCGCG
CTGAAGGCGC AGAACGACGC GATCAGGGGA CAAGGCGGCC CCTCGGGCCC GGGCGAGTTC
CCGGAGTTCC AGGAGCCGCA CCTGACCCTG GCGAGCCCGG CCGGCATCCA GGCCACCACG
GCCGCCAGCA CCCACCTCGT GAGCGTGGAG CACACGGCCA TCAGCAGCGG TGCGCACACC
AGCGTGGCCA CGGGCAACAG CTTCCTGGTG AGCGCCAAGG ACGCGGTGCG CATGGTCGCC
TTCAACCACG GCATCCGCCT GGCGGCGGCG GCCGCCGACA TCGACCTCAC GGCGCTCAAG
GACAGCATCA ACGCGCTGGC CAAGCTGGAC ATCAAGATGG AGGCCAACCG GATCACCATC
ACGGCGAAGG AAGAGGTGCT CATCAACGGC GGCTCCAGCT ACACGCGCTG GACGGCCGGC
GGCATCGAGA GCGGCACCAA CGGGCTGTGG CGCGCGCATG CGGCTTCGCA TTCGATGGTG
GGGCCCAAGA GCGACGGACA GCCCCGGCTG CCGCAGCCGC CCCAGCTTCC GAGAGGCCAG
CTCGACCTGT ACCACCAGTA CGTCAAGGCC GACGGCGCCA CGCGCCAAGG CGTGAAGCAA
GGCGACTACA CGGTGGTGGA CTCCGACGGG GGCACGCACA CGGGCAAGCT GGACGCGAAC
GGCTTCGCCT CCGTGGCGGG CCTTCCGCTC GGGCAGGCCA AGGTCACGTT CGGCGGCGAT
CCGAGCGACC CCTGGGACAC CGGCAGCTAC TTCGGCCAGC CGAACCGCTG GCCCACCCGG
CCTGCGAGCG ACAAGTCCGT CGACGCGGGA GGCGGTGGAG CGGGCTTCGT CGGCGGAACG
GGCGGACTCG GCAGCGCAGC GGCGGGCCTG CTGGGCCAGG CGGGCGGCCT CGAAAGCCAG
GCCAGCGAGG CAGCGAGCAC CGCGCAGCAG GCCGTCGGTG CCGTGCAGGC CATCCAGCAA
GGCGGCGCCA AGGCATTGCT GGGCCAGGTC GGCCAGGCGG CCAGCGGCAT GGCCGCGCAG
ACCGTGGGCG CCATGGTGCC CAAGCTGCCC GCGTCGCTGC CTTCGATGCC CTCGCTGAAG
TCCCTGGCCA CGCTGCCGCG CGGCCAGACG CCGGGCTTTG CGGGCTGA
 
Protein sequence
MKRRVTIQTP LGEALQFHRL AGREALSQAY AFDLDLLGSS NALDPKSILG KPATVVMETE 
SGVRHLGGLV TRFGLSHEDD RQAFYSMRLR PWLWLATRRS DFRIFQDQTV PEIVAAVLGR
YGHPMEQKLH RSYRPWTYCV QYRESDFDFI SRLCEHEGIY FWFRHEAEQH VLVFADDIAA
SHAPLPGGET VRYHPHEKAG MTGGLEASER IYEWAQAEEI RPGHHFRNHY DFEKPQADLA
SRRQMPPGHE HDGFEQYEWP GDYLQHDDGE TYARLRTEEQ LSQRSRVSGR SNLRELAPGH
TFRLRDHPRE DQNRQHLLLA VDYDLQENLQ ASEGANASEG SVQRFAFEAQ PTSYAWRPRR
STPKPRTRGP QTAVVVGPAG EEIWTDPYGR IKVQFHWDRL GQRNENSSCW LRVSTAWAGA
TFGAAALPRI GQEVIVDFLN GDPDYPIVTG RVHNADEMPA WQLPQQKQLT GIRSRELGGG
KSNHLALDDS SGKVQAQLKS DHQSTSLSLG HIGRIEDTAG RKDDRGQGFE LRTDGHGAVR
AARGLLLSTE ARPNAQGHIT DMRETIARLT EGRDLHESLA QVAQQAKAHE AGDQDEVARA
LKAQNDAIRG QGGPSGPGEF PEFQEPHLTL ASPAGIQATT AASTHLVSVE HTAISSGAHT
SVATGNSFLV SAKDAVRMVA FNHGIRLAAA AADIDLTALK DSINALAKLD IKMEANRITI
TAKEEVLING GSSYTRWTAG GIESGTNGLW RAHAASHSMV GPKSDGQPRL PQPPQLPRGQ
LDLYHQYVKA DGATRQGVKQ GDYTVVDSDG GTHTGKLDAN GFASVAGLPL GQAKVTFGGD
PSDPWDTGSY FGQPNRWPTR PASDKSVDAG GGGAGFVGGT GGLGSAAAGL LGQAGGLESQ
ASEAASTAQQ AVGAVQAIQQ GGAKALLGQV GQAASGMAAQ TVGAMVPKLP ASLPSMPSLK
SLATLPRGQT PGFAG