| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5679 |
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| Symbol | |
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| ID | 7975732 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 385670 |
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| End bp | 386836 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796262 |
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| Product | Mandelate racemase/muconate lactonizing protein |
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| Protein accession | YP_002947536 |
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| Protein GI | 239820351 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.319845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGATCG TCAACATCCT CGAGTCCACG CGTCCCATCA AGTCGGACAT CCGCAACGCC
TACATCGACT TCTCCAAGAT GACCCTGAGC CTCGTGGCGG TGGTCACCGA CGTGATCCGC
GACGGCCGGC CGGTGGTGGG CTACGGCTTC AACTCCAACG GGCGCTACGG CCAGGGCGGG
CTGATCCGCG AGCGCTTCCT GCCGCGCCTG CTCGAGGCCG AGCCCGCCTC GCTCCTCGAC
GAGACCGGCG ACAACCTCGA TCCGCACAGG ATCTGGGCCC GCATGATGAT CAACGAGAAG
CCCGGCGGCC ACGGCGAGCG TTCGGTGGCC GTGGGCACCA TCGACATGGC CGTGTGGGAC
GCGGTCGCCA AGATCGCCGG CAAGCCGCTC TACCAGCTGC TGGCCGAACG CTACGGCAGC
GGCACGCCCG ACCCGCGCGT GTTCGTCTAT GCCGCGGGCG GCTACTACTA CCCCGGCAAG
GGCGTCGAAG GCCTGCAGCG CGAGATGGCC AGCTACCTGG AGCGCGGCTA CTCGGTGGTC
AAGATGAAGA TCGGCGGCGC CACGCTCGCG CAGGACTGCG AGCGCATCGA GTCGGTGCTC
AGGATCCTCG GCCCCGGCCA GCAGCTGGCG GTGGACGCCA ACGGCCGCTT CGACCTGGCC
ACCGCCATCG ACTACGGCCG CGCGCTCTCG CAATACCCGC TCTTCTGGTA CGAGGAAGCC
GGCGATCCGC TCGACTACGA GCTGCAGGCC AAGCTCGGCG AGGTCTACGC CGGCCCCATG
GCCACGGGCG AGAACCTGTT CTCGATGCAG GACGCGCGCA ACCTGATCCG CCACGGCGGC
ATGCGGCCCG ACCGCGACTG GCTGCAGTTC GACTGCGCGC TGAGCTACGG CCTCGTCGAG
TACCTGCGCA CGCTCGACAT GCTGAAGGAG CACGGCTGGT CGCCCTCGCG CTGCATTCCG
CACGGCGGCC ACCAGATGTC GCTGGCCATT GCGGCGGGCC TGGGCCTCGG CGGCAACGAA
AGCTACCCCG ACCTGTTCCA GCCCTATGGC GGCTTCCCTG ACGGCGTGAA GGTGCAGGAC
GGCTACGTCA CGCTGCCGCC GCTGCCCGGC ATCGGGTTCG AAGGCAAGGC CGACCTCATC
GCGGAGATGC GCGCGCTCGC GGGTTAA
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| Protein sequence | MKIVNILEST RPIKSDIRNA YIDFSKMTLS LVAVVTDVIR DGRPVVGYGF NSNGRYGQGG
LIRERFLPRL LEAEPASLLD ETGDNLDPHR IWARMMINEK PGGHGERSVA VGTIDMAVWD
AVAKIAGKPL YQLLAERYGS GTPDPRVFVY AAGGYYYPGK GVEGLQREMA SYLERGYSVV
KMKIGGATLA QDCERIESVL RILGPGQQLA VDANGRFDLA TAIDYGRALS QYPLFWYEEA
GDPLDYELQA KLGEVYAGPM ATGENLFSMQ DARNLIRHGG MRPDRDWLQF DCALSYGLVE
YLRTLDMLKE HGWSPSRCIP HGGHQMSLAI AAGLGLGGNE SYPDLFQPYG GFPDGVKVQD
GYVTLPPLPG IGFEGKADLI AEMRALAG
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