| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5678 |
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| Symbol | |
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| ID | 7975731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 384933 |
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| End bp | 385640 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 644796261 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947535 |
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| Protein GI | 239820350 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.515185 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCGAATG AAGCGGCAGC AGCCCCGCAT GCCGTGGTGA CGGGCAGCAG CAGCGGCATC
GGCCGCGCCA TTGCGCTGCA CCTGCTCGAA GAAGGCTGGC GCGTGAGCGG GCTCGACCTG
GCGGCGCCCA CGCTCTCGCA CGCGGGCTTC ACGCACGCGG CGGCCGACCT GTCGAGCGCC
GAGGCCATCG CGCGCGCCGC GGCCGCTCTC CAGGATGCCG GCGCGCTCGT GCATGCGGCC
GGCGTGCTGC GCGTGGGCCC GCTCGGGCAG CTCGACCATG CGGGCGGCGA GCTGATGTGG
CGCCTGCATG TCGATGCCGC CACGCGGCTG GCCGATGCGC TGGTGCCCGC AATGGCCGCG
CGCGGACATG GCCGCGTGGT GTTCGTCGGC AGCCGCGTGG CGCACGGCAT GCCGGGCCGC
GGCCAGTACG CCGCCACCAA GGCGGCGCTG GTCGCGCTCG CGCGCAGCTG GGCGGCCGAG
GTCGCGGAGC GCGGCGTCAC CCTCAACGTG GTGTCGCCCG GCGCCACGCA GACCGCGATG
CTGCAGGACC CGGCGCGCGC CGGCAGCGCG CCGCGCCTGC CGCCCATCGG CCGGCTGATC
CAGCCCGCGG AAATCGCTGC GCTGGTGGCC TTTCTTCTTT CGGCGCCGGC CGCGGCCATC
ACCGGCCAGG ACATCGCCAT CTGCGGCGGT GCGTCGCTGC ACCGCTGA
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| Protein sequence | MSNEAAAAPH AVVTGSSSGI GRAIALHLLE EGWRVSGLDL AAPTLSHAGF THAAADLSSA
EAIARAAAAL QDAGALVHAA GVLRVGPLGQ LDHAGGELMW RLHVDAATRL ADALVPAMAA
RGHGRVVFVG SRVAHGMPGR GQYAATKAAL VALARSWAAE VAERGVTLNV VSPGATQTAM
LQDPARAGSA PRLPPIGRLI QPAEIAALVA FLLSAPAAAI TGQDIAICGG ASLHR
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