| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5668 |
|---|
| Symbol | |
|---|
| ID | 7975721 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 375290 |
|---|
| End bp | 376303 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644796251 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_002947525 |
|---|
| Protein GI | 239820340 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.889087 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCA CCCGCCGCAC CGTGCTGCGC TCGACGGCAC TGGCCGCCAG CCTCGCCGTT
CCCATGCATC GGGCCTTCGC GCAGAAGGCC GAGTTCAACT ACAAGTACGC GAACAACCTG
CCGGTCACGC ATCCGCTCAA CATCCGCGCC AAGGAGATGG CCGACGCCAT CCGCGCCGAG
ACCGGCGGCC GCGTCGACAT CCAGATCTTC CCGAGCAACC AGCTGGGTTC CGACACCGAC
GTGCTGAGCC AGTTGCGCTC GGGCGGCGTG GAGTTCTTCA CACTGTCGGG GTTGATCCTT
TCCACGCTCG TGCCTTCGGC GTCGATCAGC GGCGTGGGCT TTGCCTTCAA CGACTACGCG
AGCGTGTGGA AGGCGATGGA CGGCGAGCTG GGCGCGCACA TCCGCCAGCA GATCGCCAAG
GCCAACATCG TGCCGATGGA GAAGATCTGG GACAACGGCT TCCGGCAGAT CACCTCGTCG
AGCCGGGCCA TTGCCGCGCC GCAGGACATG AAGGGCTTCA AGATCCGCGT GCCGGTGTCG
CCGCTGTGGA CCTCGATGTT CAAGGCACTC GACGCCGCGC CCACGTCCAT CAACTTTGCC
GAGGTCTATT CGGCGCTGCA GACCAAGATC GTCGACGGGC AGGAGAACCC GCTCGCCATC
ATCGCGACGG CCAAGCTCTA CGAGGTGCAG AAGTACTGTT CGCTGAGCAA CCACATGTGG
GACGGCTTCT GGTTCCTGGC CAACCGGCGT GCCTGGGACA AGCTGCCCGC CGATCTGCGC
ACCGTGGTGG CCCGCCACAT CAACGCAGCC GGCATGAAAG AGCGCGCCGA CGTGGCCGAG
CTCAACGCCG GGCTGCAGAA GGAACTGGCC GCCAAGGGCA TGGCCTTCAA CCAGCCGGAC
GCAGCCGCCT TCCGCGACCA GTTGCGCAAG GCCGGCTTCT ACAGCGAGTG GAAGGCCAAG
TACGGCGACG AGGCCTGGGC GCTGCTCGAG CGCAGCGCGG GCAAGCTTGC ATGA
|
|---|
| Protein sequence | MSITRRTVLR STALAASLAV PMHRAFAQKA EFNYKYANNL PVTHPLNIRA KEMADAIRAE
TGGRVDIQIF PSNQLGSDTD VLSQLRSGGV EFFTLSGLIL STLVPSASIS GVGFAFNDYA
SVWKAMDGEL GAHIRQQIAK ANIVPMEKIW DNGFRQITSS SRAIAAPQDM KGFKIRVPVS
PLWTSMFKAL DAAPTSINFA EVYSALQTKI VDGQENPLAI IATAKLYEVQ KYCSLSNHMW
DGFWFLANRR AWDKLPADLR TVVARHINAA GMKERADVAE LNAGLQKELA AKGMAFNQPD
AAAFRDQLRK AGFYSEWKAK YGDEAWALLE RSAGKLA
|
|---|
| |