Gene Vapar_5659 details

Gene Information

• Locus tag: Vapar_5659
• ID: 7975712
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: -
• Start bp: 365728
• End bp: 366393
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 66%
• IMG OID: 644796243
• Product: regulatory protein TetR
• Protein accession: YP_002947517
• Protein GI: 239820332

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCGC CCATCCCCTA CGTACGCGCC CGCTCTGCCG AGCAGAAGGA AGAGCGGCGC 
CGCCATCTGC TGGCCACGGC CCGGGAAATG CTGCACCGGA GCCCGGAGGC CCTCGACCTG 
GGCATCAACG AACTCGCGCG CGAGGCGCAG ATGACCAAGT CGAACGTCTA CCGGTACTTC 
GAAAGCAGCG AGGCGGTGTT GATGGACCTG CTCGTCGAAG AATTCGCAGG CTGGCATGCC 
GAGCTGGGCG CGGCACTGGC GCGCGGCGGC AAGGCCGGCG CGAGCGTCGA GCACATTGCC 
CGCGTCTTCG CCTCGACCAT TTCTGCGCGG CCCTTGCTTT GCCGGCTGAT CAGCATCCTG 
CCGTCCATCC TCGAGCGCAA GGTGTCGTTC GAACGCATGG TCGACTTCAA GGGCAGCCTG 
CTGGCGGTCC GCCAACAGAC GGCGCGGGAC TTCCATGCCC GCGTGCCCGC CATGCCGGTG 
CCGGCCTTCG AACAGGTGGT GAAGCATTCG CTGCCGCTCA TCATCGGGCT GTGGCCGCTC 
AGCAACCCGG CGGGGATGGC CGCGCAGGTG ATCGAGCTCC CCGAGTTGAA GAGCCTGCGG 
TACGACTTCG AGAAAGACCT CGAACATGCC CTGCTCACAT TGATGCGGGG AATGGCCCAG 
GCGTAG 

 

Protein sequence

MNSPIPYVRA RSAEQKEERR RHLLATAREM LHRSPEALDL GINELAREAQ MTKSNVYRYF 
ESSEAVLMDL LVEEFAGWHA ELGAALARGG KAGASVEHIA RVFASTISAR PLLCRLISIL 
PSILERKVSF ERMVDFKGSL LAVRQQTARD FHARVPAMPV PAFEQVVKHS LPLIIGLWPL 
SNPAGMAAQV IELPELKSLR YDFEKDLEHA LLTLMRGMAQ A