| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5650 |
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| Symbol | |
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| ID | 7975262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 355918 |
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| End bp | 356829 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796234 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947508 |
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| Protein GI | 239820323 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00706693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTCA GGCACCTGCG CTACTTCATC GCCCTGTCGG GCTCGCTGAA CTTCACGCGC
GCGGCCGAGC GCCTGCATGT GACGCAGTCG ACGCTGTCGC ACCAGATCAA GCAGCTCGAA
GAGGAGATCG GCGTTGCGCT GTTCGACCGC ATCGGCAAGC GCGTGAGCCT GACCGATGCC
GGCGACGAGT TCCTGCACTA CTGCACCAAG GCCCTGCACG AGATCGACCT GGGGCTGGGT
GCGCTGCGCC AGGACAGCTC CGAGGTGGCG GGCGAGCTGC GCGTGGGCTC CACGCACACC
TTCAACCTCG GCTTCATCCC CGACTGCATC GCGAGCTTCC AGGCGCGGCA TCCGCGCGTG
AAGGTGGTGG TCGAGGAACT GTCGGCCGAC CAGATCGCCG CGCGCCTGCA GCAGGGCACG
CTGGACCTGG GCATCGCCTA CCGGCCGAGC GCGCCCGGGC CGCTGCAGTT CGAGCCGCTC
TACAACGAGG AGATGGTGCT GGTGGTGGCC AGGAAGCACC CGCTCGCGCG GCGCAAGCGC
GTGCGCATGG TGGAGCTGCA CCGCCTGCCG ATGGTGCTGC TGCCGGCCAG CTTTGCCACG
CGCCAGATGC TCGACGAATG CTTTCGCTCC TGCGGTGCGC AGCCGCACGT GGTGGCCGAG
ATCAACACGC TGGCGCCGAT GATGGACCTG GTCGCCAAGA CGCAGCTCGC GTCCATCGTG
GCCGCGAACG TGGTCAACCC GCTCTCGGGG CTGGTCGTCA TCCGGCTCGA AAGCCCCACG
CCCGTGCGCA CGCCCGGCAT GCTGTGGTCG CCGGTGGCGC GCGACGCAGC GGCCACGCGC
GCGTTCTCGA CCATCGTGCG CAAGCTGGCG CTGCGCAGCA GCCTGCAGGG GGCTGGCCCG
CGCGTGCGGT AG
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| Protein sequence | MELRHLRYFI ALSGSLNFTR AAERLHVTQS TLSHQIKQLE EEIGVALFDR IGKRVSLTDA
GDEFLHYCTK ALHEIDLGLG ALRQDSSEVA GELRVGSTHT FNLGFIPDCI ASFQARHPRV
KVVVEELSAD QIAARLQQGT LDLGIAYRPS APGPLQFEPL YNEEMVLVVA RKHPLARRKR
VRMVELHRLP MVLLPASFAT RQMLDECFRS CGAQPHVVAE INTLAPMMDL VAKTQLASIV
AANVVNPLSG LVVIRLESPT PVRTPGMLWS PVARDAAATR AFSTIVRKLA LRSSLQGAGP
RVR
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