| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5644 |
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| Symbol | |
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| ID | 7975256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 350669 |
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| End bp | 352114 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644796228 |
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| Product | transcriptional regulator, GntR family with aminotransferase domain |
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| Protein accession | YP_002947502 |
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| Protein GI | 239820317 |
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| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
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| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCAAG AGAAGAAACC GCCCGCCGCC CTCCTCGCGA TCGACCGCGC AGCGTCCACG
CCGCTGCACC GGCAGATCTA CGAGCGCTTC CGCACGGCCA TCGAGCAGGG CCTGCTCCGC
CCGGGCGACC GCGTGGCCTC GGCGCGCAGC CTGGCCAGCG AACTGGGCGT GGCGCGCGGC
ACCATCGAGG CGGCCTACAA CCAGCTCGCG GGCGAAGGCT ATTTCTCGCC GCAGGGCCAG
GCCGGCACGG TGGTCTCGCC CTCGCTGCCC TCCCCGCGGT CGGCGCGCCG CACGTCCCGG
CAAGCCGAGG CGCGGGCCGT GGAGCACGAC CTGGCCGATC CCGCGCCGCC ACCGCCCCTG
CAGCTGGGCA TTCCGGCGCT CGATGCCTTC CCGCGCAAGC TCTGGTCGCG CCTGGTGTCG
CGCCGCGCCA GGGCGATGGC CGCGGCCGAC ATGTTCTATG GCGACCCCTC GGGCCATCCG
CCGCTGCGCA CCGCCATTGC CGCCTACCTG CGGGTGTCGC GCGGCGTCGC ATGCCATCCG
TCGCTGGTCT TCGTGACCGG CGGCTACCGC GCATCGCTCG CGCTCATCTC GCACGCGCTG
CTCGCCAAGG ACGAGCGCGT GTGGGTGGAG GACCCGGGCT ATCCGCCGAC GCAGGAGGTG
CTGCGCAGCG CCGGCCAGCG CACGGTGCCC GTGCCGGTCG ATGAAGAAGG CCTGGTCGTT
GCGCGCGGCA TGCGCAAGGC AGCGAAGGCG AAGACGGCCG TCGTCACGCC CTCGCACCAG
GCGCCGCTCG GCGTCTCGAT GTCGCTCGCC CGCCGGCTGC AACTGCTCGA CTGGGCCTCG
CAGGCGAAGG CCTGGATCGT CGAGGACGAC TACGACGGCG AATACCGCTA CACCGGCCTG
CCGCTGCCCG CGCTCAAGAG CCTCGACCGC CATGACCGCG TGCTCTACGC CGGCAGCTTC
TCGAAGGTGC TGTATCCCGG ACTGGCGCTC GGCTACGTGG TGGTGCCCGA TGCGCTGCGC
GGCGCCTTCG ACGAGGCCGC GCGGACCGGG TCCAACGGAT GCCCGCAGCT CACGCAGGCG
GTGGTCGCCG ATTTCATGCG CGAAGGCCAT TTCTCGCGCC ACTTGAAGAA GATGCGGCTG
CTCTATGCGC GCCGCCGCCA CATGCTCGCG GCCGCGCTGC AGAAGGCCTT CGGTGACGAA
GTGCGCATCG ACCTGCAGGC CGGCGGCATG CACCTGATCG CGCGCTTCGA CCGGCGGCGC
GAGAGCGACG CGGAACTGGC ACGCCGGGCG CAACGCGCCG GACTGAACTG CCAGCCGCTG
TCCGCGCGGG GCACGGCAGG TTTCCGGGAC GAGGGGCTGT TGATGGGCTT CACCAATGTT
GGCTCGGCGC TGCATGCGCA GCAGCTCGCG GCGAAGCTGC ACAAGGCCTT GGGCCGCGAG
CCCTGA
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| Protein sequence | MIQEKKPPAA LLAIDRAAST PLHRQIYERF RTAIEQGLLR PGDRVASARS LASELGVARG
TIEAAYNQLA GEGYFSPQGQ AGTVVSPSLP SPRSARRTSR QAEARAVEHD LADPAPPPPL
QLGIPALDAF PRKLWSRLVS RRARAMAAAD MFYGDPSGHP PLRTAIAAYL RVSRGVACHP
SLVFVTGGYR ASLALISHAL LAKDERVWVE DPGYPPTQEV LRSAGQRTVP VPVDEEGLVV
ARGMRKAAKA KTAVVTPSHQ APLGVSMSLA RRLQLLDWAS QAKAWIVEDD YDGEYRYTGL
PLPALKSLDR HDRVLYAGSF SKVLYPGLAL GYVVVPDALR GAFDEAARTG SNGCPQLTQA
VVADFMREGH FSRHLKKMRL LYARRRHMLA AALQKAFGDE VRIDLQAGGM HLIARFDRRR
ESDAELARRA QRAGLNCQPL SARGTAGFRD EGLLMGFTNV GSALHAQQLA AKLHKALGRE
P
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