| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5640 |
|---|
| Symbol | |
|---|
| ID | 7975252 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 347764 |
|---|
| End bp | 348768 |
|---|
| Gene Length | 1005 bp |
|---|
| Protein Length | 334 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644796224 |
|---|
| Product | transcriptional regulator, MerR family |
|---|
| Protein accession | YP_002947498 |
|---|
| Protein GI | 239820313 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGATCTC CCGCCCCGCA CCTGACCCCT TCCGAAGCCG CGCGGCAGCT CGGCGTTTCG
GCCAAGGCCC TGCGGCTGTA CGAGCAGCGC GGCCTGGTCG AGCCCGGCCG GACCGCGGCG
GGATGGCGGG CCTACGGCCC GGCGGAGATG GCGCGCGCCG GCGAGATCGT CGCGCTTCGC
GCGCTCGGCT TCAGCCTGGC CCAGGTGGCA CGGGTGCTCG CGGGCAACCC TGAAGGCCTG
GAGCAGGCAT TGGCCGCGCA CCAGGCGGCG CTGGAGGCGC AGCTTCGCCA GCTCATGCGC
ACCGTCGAGA AGGTTCGCGA CTTGCGAAGC GATGTTGCGC AAGGCCGGAC ACCGAGCATC
GGCGAACTCG CGGGCCTGCT CGCGCCCGCC GGCGAAGTGC GCCTGGCCTT CGACCTGCCA
TGGCCCTGGG GCGGAGAGCG CTTCGAGCTT CGGGACATCC GGCCGCTGAA CTACATCGTC
GGCCCGCTCG GCAGCGGCAA GACCCGGCTG GCGCAGCGCA TTGCCGAGGT GCTGCCCAAC
GCGGCCTGGC TCGGGCTGGA CCGGCAGGCG GAGTGCGGCG CCGCTGCGCG CGAGCCTCGG
GTCGACCACG CGCTGGCCTG GCTCGTGGAA GACGGCGCAA CGCCATCGGA TGCGCTGATT
GCACTTCTGG CCGGGCTGGA AGCCGAAGGC CCCGATGCGG TGGTCGTGGA CCTGATCGAA
CACGGCCTGG ACCAGGCCAC CCAGGAGGCG CTGATCGCCC GGCTGCGCTG CCGCGGACCC
AACGCGCGGC CGATCTTCAT GCTCACGCGC TCCTGCGCAA TCCTCGACCT GACGGCCGTC
GGACCGGACG AGGCGATCAT CCTGTGCCCC GCGAACCACA GCCCGCCGAC CGTGGTCGCA
CCCTGCCCCG GCGCGCCGGG CTACGAGGCC GTCGCCACCT GCCTGGCGTC GCCGGAAGTG
CGGGCGCGAA CGGCGGGGGT TGTCGCGTGG CGGCAGGCGG CCTGA
|
|---|
| Protein sequence | MRSPAPHLTP SEAARQLGVS AKALRLYEQR GLVEPGRTAA GWRAYGPAEM ARAGEIVALR
ALGFSLAQVA RVLAGNPEGL EQALAAHQAA LEAQLRQLMR TVEKVRDLRS DVAQGRTPSI
GELAGLLAPA GEVRLAFDLP WPWGGERFEL RDIRPLNYIV GPLGSGKTRL AQRIAEVLPN
AAWLGLDRQA ECGAAAREPR VDHALAWLVE DGATPSDALI ALLAGLEAEG PDAVVVDLIE
HGLDQATQEA LIARLRCRGP NARPIFMLTR SCAILDLTAV GPDEAIILCP ANHSPPTVVA
PCPGAPGYEA VATCLASPEV RARTAGVVAW RQAA
|
|---|
| |