| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5638 |
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| Symbol | |
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| ID | 7975250 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 345077 |
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| End bp | 346165 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796222 |
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| Product | tartrate dehydrogenase |
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| Protein accession | YP_002947496 |
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| Protein GI | 239820311 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
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| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCCCA CATTCCGCAT TGCGCTGATC GCCGGCGACG GCATCGGCAA GGAAGTGATG
CCCGAGGGCC TGCGCGTGGT GCTGGCCGCC GCAGAGCGCT TCGGCTTCGA GCTCGACTGC
CGCACCATCG AATGGGCCAG CTGCGGCTAC TACGCACAGC ACGGCCAGAT GATGCCGGAC
GACTGGAAGG AACAGCTGCG CGGCGTGGAC GCGCTCTATT TCGGCGCCGT CGGCTGGCCC
GAGACCGTGC CCGACCACGT CTCGCTCTGG GGATCGCTGC TGAAGTTCCG CCGCGAGTTC
GACCAGTACA TCAACCTGCG CCCGGTGCGC CTGTTCGAAG GCGTGCCCTG CCCGCTGGCC
GGCCGCAAGC CCGGCGACAT CGACTACCTG GTGGTGCGCG AGAACACCGA AGGCGAATAC
ACCTCGCTCG GCGGCGTGAT GTACGAAGGC ACCGAGCGCG AGATCGTGAT CCAGGAATCG
GTGTTCTCGC GTCACGGCAC CGACCGCGTG CTGAAGTACG CCTACGAACT CGCCCAATCG
CGCAAGAGAA AGCACCTCAC CGTGGCCACC AAGAGCAACG GCATCGCGAT CAGCATGCCG
TGGTGGGACG GCCGCGCCGA CGCCGTCGCC CGCGACCATC CGGACGTGAC CATCGACAAG
CAGCACATCG ACATCCTGTC GGCGCGCTTC GTGCTGCAGC CCACGCGCTT CGACGTGGTG
GTGGCAAGCA ACCTGTTCGG CGACATCCTC TCCGACCTCG GTCCGGCCAC CACCGGCACC
ATCGGCCTCG CGCCCTCGGC CAACCTCAAC CCGGAGCGCA AGTTTCCATC GCTGTTCGAG
CCGGTGCACG GCTCGGCGCC CGACATCTAC GGCCAGAACA TCGCGAACCC GATCGCGATG
ATCTGGTCGG GCGCGCTGAT GCTGGACTTC CTCACGCAGG GCCAGGGTGC GGGCCGCGCC
GCGCATGACG CGATCCTCGG CGCGATCGAA GCGGTGCTGC GCGACGGCCC GCGCACGCGC
GACCTGGGCG GCACGGCCTC GACCACCGAG GTGGGCATGG CCATTGCCCA GCGCGTGGCG
GCTGCCTGA
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| Protein sequence | MTPTFRIALI AGDGIGKEVM PEGLRVVLAA AERFGFELDC RTIEWASCGY YAQHGQMMPD
DWKEQLRGVD ALYFGAVGWP ETVPDHVSLW GSLLKFRREF DQYINLRPVR LFEGVPCPLA
GRKPGDIDYL VVRENTEGEY TSLGGVMYEG TEREIVIQES VFSRHGTDRV LKYAYELAQS
RKRKHLTVAT KSNGIAISMP WWDGRADAVA RDHPDVTIDK QHIDILSARF VLQPTRFDVV
VASNLFGDIL SDLGPATTGT IGLAPSANLN PERKFPSLFE PVHGSAPDIY GQNIANPIAM
IWSGALMLDF LTQGQGAGRA AHDAILGAIE AVLRDGPRTR DLGGTASTTE VGMAIAQRVA
AA
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