| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5636 |
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| Symbol | |
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| ID | 7975248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 342523 |
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| End bp | 343428 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796220 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947494 |
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| Protein GI | 239820309 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACCT CCACCACTTC AACGGTCGCG AGCACCACGG CCTTGCTGGC GCCGGTGCCG
CAAGAGCGCC GGGCCGGTCC GCTGCGCTGG CTCGCCGGCT TTGGCGCCTC CGGCCTGCTG
GGCCTCGCGG TGCTGCTGTT CTGGCTGCTC GCGGCGCTGC TCGGACCCTG GCTGCTGTCG
CACAGCGCGG CAGCCATGGG CACCTCGAAC GTCTTCGAGC CGATGAGCGC GGCGCACTGG
CTGGGCACCG ACTACCTCGG CCGCGACATG CTGGCGCTGA TCATCGAAGG GGCGCGCTAC
ACGATTGGCG TTGCGTTGCT GGCCACGCTG CTGGCCAGCG GCACCGGCAC CGTGCTGGCG
CTGCTGGCCG CCGCCAGCGG CCGCTGGATC GACGCGGTGC TGAGCCGCGG CCTGGACACG
CTCACGGCCA TCCCGAGCAA GATGTTCGCC CTCATCATGG TGGCGGGCTT CGGCTCCTCG
GTGCCGATGC TGGTGGTCAC GGCGGCCATC ATCTACGTGC CGGGCGCCTA CCGCATGGCG
CGCTCGCTGG CCGTCAACAT CAACGCGCTC GACTACGTGA CCGTGGCGCG CACGCGCGGC
GAAGGCACGC TCTACATCAT GCTGCGCGAG ATCCTGCCCA ACATCCTGGG CCCGATGCTG
GCCGACCTGG GCCTGCGCTT CGTCTACGTC GTGCTGCTGC TGGCGAGCCT GAGCTTCCTG
GGCCTGGGCA TCCAGCCGCC GGCGGCCGAC TGGGGCTCGC TGGTGCGCGA GAACATCGGT
GCGCTCGCCA TGGGCGGCGC CTCGGTGATC GTGCCGGCGC TGGCCATTGC GAGCCTGACC
ATTGCGGTCA ATCTCGTCAT CGACAACCTG CCCGGCCGTG CGGCCCGGGA ACGAGGAGCA
CGCTGA
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| Protein sequence | METSTTSTVA STTALLAPVP QERRAGPLRW LAGFGASGLL GLAVLLFWLL AALLGPWLLS
HSAAAMGTSN VFEPMSAAHW LGTDYLGRDM LALIIEGARY TIGVALLATL LASGTGTVLA
LLAAASGRWI DAVLSRGLDT LTAIPSKMFA LIMVAGFGSS VPMLVVTAAI IYVPGAYRMA
RSLAVNINAL DYVTVARTRG EGTLYIMLRE ILPNILGPML ADLGLRFVYV VLLLASLSFL
GLGIQPPAAD WGSLVRENIG ALAMGGASVI VPALAIASLT IAVNLVIDNL PGRAARERGA
R
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