| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5634 |
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| Symbol | |
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| ID | 7975246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 339775 |
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| End bp | 341397 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644796218 |
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| Product | extracellular solute-binding protein family 5 |
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| Protein accession | YP_002947492 |
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| Protein GI | 239820307 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGACA GCAGCAACAA GAGGTTCGAA AACCTCGTCG GTCCCGGCGA AAGCCTTCGC
GTGATGGATT CGCTCAAGCG CGGCGCATCG CGGCGCGACA TCCTCACGAT GCTGATGGCC
GGCGGCATGC AGGCCACCCT GGCGGGCAGC CTTGCAAGCG TGGCGATGAG CGCCCATGCG
CAGACGCCGC GCAAGGGCGG CCGGCTGCGC GTGGCAGGCG CCACGGCCGC CGCCACCGAC
ACGCTCGATC CGGCCAAGCA GTCGAACCAG ACCGACTACT CGCGCTGCAA CATGGTCTAC
AACGGCCTGA CCACGCTCGA CGGCAGTCTC ACGCCGCAGC CCGCGCTGGC CGAATCCTTC
ACCACCAAGG ACGCCAAGAC CTGGGTCTTC ACCTTGCGCA AGGGCGTGGC CTTCCACGAC
GGCAAGGCGC TTGCGCCGGC CGACGTGGTG TTCTCGGTGA TGCGCCACAA GGACCCGGCC
ACCGCCTCCA AGGCCAAGAT CCTGGCCGAC CAGATCGAGA GCGCCAAGGC CACCGGCCCG
AACGAAGTGA CCTTCGTGCT CAGCGCACCG AACGCCGACC TGCCGGTGAT CCTGGGCACC
TTCCACTTCC ACATCGTCAA GGAAGGCACC ACCGACTTCA ACGCCGGCAT CGGCACCGGC
CCCTACAAGC TCAAGGAGTT CAAGCCCGGC GTGCGCTCGC TGATGGTGCG CAACGAGGCC
TACTGGAAGC CGGGCAAGCC CTACCTCGAC GAGATCGAGT TCGTGGGCAT CGGCGACGAG
AGCGCGCGCG TCAACGCGCT GCTCTCGGGC GGCATGGACC TGGTCGGCTC GGTCAATCCG
CGCTCGGTGG AGCGCGTGAA GGGAACGCCC GGCTTCGGCA TCTTCGTGAC GCAGTCGGGC
CAGTACTCCG ACCTCATCAT GCGCAAGGAC GTGGGCCCCG GCGCCAACCC CGACTTCGTG
CTCGCCATGA AGCACCTGTT CGACCGCGAG CAGATGAAGA AGACCATTGC GCTCGATTAC
GCGGTGGTGG CCAACGACCA GCCCGTCGAC CCGACCAACC GCTTCTACTT TGCCGGCCTG
CCGCAGCGCG CCTTCGACCT GGACAAGGCG AAGTTCCACC CGCAGAAGTC CGGCATCACG
GGCAAGGTGC CGATGGTGGC CTCGCCCGCG GCGCTCTATT CGGTGGAGAT GTCCCTGCTG
CTGCAGCAGA CGGCGCAGCG CGCGGGGCTG GAGCTGGACA TCAAGCGCAT GCCGGCCGAC
GGCTACTGGT CGAACCACTG GCTCAACAGC CACGTCGGCT TCGGCAACGT CAATCCGCGC
CCGAGCGCCG ACGTGCTGCT GACGCAGTTC TTCCAGTCGG GTGCGGCATG GAACGAGTCG
CGCTGGAAGA GCGAGAAGTT CGACCAGCTG CTCGTGGCCT CGCGCGCCGA GACCGACCTG
GCCAAGCGCA AGCAGATGTA TGCCGACATG CAGACCATGA TCCACCAGGA CGCAGGCATC
GGCATTCCGC TGTTCCTCTC GAGCCTCGAC GGCCACAGCT CCAAGCTCAA GGGCCTGTCG
CCCATTCCGC TGGGTGGCCT CATGGGCTAC AACTTCGCCG AGAACGTCTG GCTAGAAACA
TGA
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| Protein sequence | MSDSSNKRFE NLVGPGESLR VMDSLKRGAS RRDILTMLMA GGMQATLAGS LASVAMSAHA
QTPRKGGRLR VAGATAAATD TLDPAKQSNQ TDYSRCNMVY NGLTTLDGSL TPQPALAESF
TTKDAKTWVF TLRKGVAFHD GKALAPADVV FSVMRHKDPA TASKAKILAD QIESAKATGP
NEVTFVLSAP NADLPVILGT FHFHIVKEGT TDFNAGIGTG PYKLKEFKPG VRSLMVRNEA
YWKPGKPYLD EIEFVGIGDE SARVNALLSG GMDLVGSVNP RSVERVKGTP GFGIFVTQSG
QYSDLIMRKD VGPGANPDFV LAMKHLFDRE QMKKTIALDY AVVANDQPVD PTNRFYFAGL
PQRAFDLDKA KFHPQKSGIT GKVPMVASPA ALYSVEMSLL LQQTAQRAGL ELDIKRMPAD
GYWSNHWLNS HVGFGNVNPR PSADVLLTQF FQSGAAWNES RWKSEKFDQL LVASRAETDL
AKRKQMYADM QTMIHQDAGI GIPLFLSSLD GHSSKLKGLS PIPLGGLMGY NFAENVWLET
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