Gene Vapar_5625 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5625 
Symbol 
ID7975237 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp330137 
End bp331585 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content70% 
IMG OID644796209 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002947483 
Protein GI239820298 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCGACG AGGACCACGA CGCCGGCAGG GCCGATTGGG CGGTGCTCGT TGCCGCGAGT 
TCGGGCGCGC TGCTGTGCTT TCTCAATCTC AGCGCGCTCA ATGTCGCGCT GCCGGCCGTG
GCGCGCAGCC TGCATGCTTC GCCGACGCAG GCAAGCTGGA TCCTGCTGTC CTACATGCTG
GTCAGCACCG TCTGCATCCT GAGCTTCGGA CGCCTGGCCG ATCTCTGGGG ACGGCGCCGG
CTCTTCCTCG CGGGGCTGTG GCTCTTCGTG GCCGCCTGCG CGGCATGCGC CCTCGCACCC
AGCGCCGAAC TGATGCTGGC GAGCCGAATC GCCCAGGCCG TCGGTGCGGC CGGCGTCATG
GCCAACGCCA GCGCCTTGGT GGGCGATGCC TTCGGCCGCC GCAGGATGGG GCTGGCACTG
GGCGTGCTCG CCATGGTTGC GGCGCTGGCC CAGGTCGTCG GCCCGCTGGC GGGCGGCTTC
GTCGTGTCGT GGTGGGGATG GCGCGTTCTC TTCATGCTCA ACGTGCCGAT CGGGCTTGGC
GTGCTGGCGT GGTCCTGGAA GGTGCTGCCC CACAGTGCGG CCGCCGGGGC CGAACGCTTC
GACCTCGCAG GCGCGGCGCT GTCGCTCGTC GGCATCGGAT GCGTGACCTA TGCACTCTCG
ATGGCCGGCA CCCACGGCTG GGCCAGCACG CCGGTGTGGG CCTCCATGCT CGCGGGGCTG
TGCGCCATTG CCCTCTTCTC CGGCGTTCAG ATGCGCGTGG CCAGCCCGCT GGTCGACCCC
TCGCTGTTCA GCGACCCGGC ACGCCGGACC GCGTACGCGG GCATCCTGCT GCTGTCGATG
ACGCAGGCGG CGCCCCTGTT GCTGATGGCC TTGTACCTGC AGGCCTGCGC GGGCCTTCAG
CCATCGCAGG CGGGCCTGCG CATTGCACCG GTGGCGTTCG GCATGCTGAT GGCTGCGCCG
CTGGCGGGCG CCCTGACGCG GCGCTTCAGG CCCGAATCCA TCTGCGTGGC CGGCATGCTG
CTCGCGGGAT GCGCCCTGGC GCTGCTGGCC GCGCTGCTGC AGCCGGCGAT CGGCACCGTG
CAGCTGTCGC TGTGCCTCTG GCTGCTCGGC CTGGGCATCG GGAGCTTCGT GACACCGAAC
AACACATCGA TCCTCCAGAG CGTGGCGCCC CGGCGCCGGG GCATCGCCAA CGGCGTCCGG
TCGACGCTGC AGAACACCGG CATCATGATC GGCACCGCGC TGACGCTGAG CGTGGCGATG
GCGCAGCTTC CTTCCGGTTC GCAACGCATG ATTCTGGGAA ATGGCGGCCC AGGGCTTTCG
AACCTGGATG TGGTGGCCTT TACCAAAGGG GCCAGTTCTG CGCTGGTGCT GCTTGCGGTC
CTTTGCTTTG CCGGCGCGGC CCTGATCGCG AATACCCGGC GTCAAGCCGG CCGGCTGCAA
TCAGCGTGA
 
Protein sequence
MADEDHDAGR ADWAVLVAAS SGALLCFLNL SALNVALPAV ARSLHASPTQ ASWILLSYML 
VSTVCILSFG RLADLWGRRR LFLAGLWLFV AACAACALAP SAELMLASRI AQAVGAAGVM
ANASALVGDA FGRRRMGLAL GVLAMVAALA QVVGPLAGGF VVSWWGWRVL FMLNVPIGLG
VLAWSWKVLP HSAAAGAERF DLAGAALSLV GIGCVTYALS MAGTHGWAST PVWASMLAGL
CAIALFSGVQ MRVASPLVDP SLFSDPARRT AYAGILLLSM TQAAPLLLMA LYLQACAGLQ
PSQAGLRIAP VAFGMLMAAP LAGALTRRFR PESICVAGML LAGCALALLA ALLQPAIGTV
QLSLCLWLLG LGIGSFVTPN NTSILQSVAP RRRGIANGVR STLQNTGIMI GTALTLSVAM
AQLPSGSQRM ILGNGGPGLS NLDVVAFTKG ASSALVLLAV LCFAGAALIA NTRRQAGRLQ
SA