Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5625 |
Symbol | |
ID | 7975237 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | + |
Start bp | 330137 |
End bp | 331585 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644796209 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_002947483 |
Protein GI | 239820298 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGACG AGGACCACGA CGCCGGCAGG GCCGATTGGG CGGTGCTCGT TGCCGCGAGT TCGGGCGCGC TGCTGTGCTT TCTCAATCTC AGCGCGCTCA ATGTCGCGCT GCCGGCCGTG GCGCGCAGCC TGCATGCTTC GCCGACGCAG GCAAGCTGGA TCCTGCTGTC CTACATGCTG GTCAGCACCG TCTGCATCCT GAGCTTCGGA CGCCTGGCCG ATCTCTGGGG ACGGCGCCGG CTCTTCCTCG CGGGGCTGTG GCTCTTCGTG GCCGCCTGCG CGGCATGCGC CCTCGCACCC AGCGCCGAAC TGATGCTGGC GAGCCGAATC GCCCAGGCCG TCGGTGCGGC CGGCGTCATG GCCAACGCCA GCGCCTTGGT GGGCGATGCC TTCGGCCGCC GCAGGATGGG GCTGGCACTG GGCGTGCTCG CCATGGTTGC GGCGCTGGCC CAGGTCGTCG GCCCGCTGGC GGGCGGCTTC GTCGTGTCGT GGTGGGGATG GCGCGTTCTC TTCATGCTCA ACGTGCCGAT CGGGCTTGGC GTGCTGGCGT GGTCCTGGAA GGTGCTGCCC CACAGTGCGG CCGCCGGGGC CGAACGCTTC GACCTCGCAG GCGCGGCGCT GTCGCTCGTC GGCATCGGAT GCGTGACCTA TGCACTCTCG ATGGCCGGCA CCCACGGCTG GGCCAGCACG CCGGTGTGGG CCTCCATGCT CGCGGGGCTG TGCGCCATTG CCCTCTTCTC CGGCGTTCAG ATGCGCGTGG CCAGCCCGCT GGTCGACCCC TCGCTGTTCA GCGACCCGGC ACGCCGGACC GCGTACGCGG GCATCCTGCT GCTGTCGATG ACGCAGGCGG CGCCCCTGTT GCTGATGGCC TTGTACCTGC AGGCCTGCGC GGGCCTTCAG CCATCGCAGG CGGGCCTGCG CATTGCACCG GTGGCGTTCG GCATGCTGAT GGCTGCGCCG CTGGCGGGCG CCCTGACGCG GCGCTTCAGG CCCGAATCCA TCTGCGTGGC CGGCATGCTG CTCGCGGGAT GCGCCCTGGC GCTGCTGGCC GCGCTGCTGC AGCCGGCGAT CGGCACCGTG CAGCTGTCGC TGTGCCTCTG GCTGCTCGGC CTGGGCATCG GGAGCTTCGT GACACCGAAC AACACATCGA TCCTCCAGAG CGTGGCGCCC CGGCGCCGGG GCATCGCCAA CGGCGTCCGG TCGACGCTGC AGAACACCGG CATCATGATC GGCACCGCGC TGACGCTGAG CGTGGCGATG GCGCAGCTTC CTTCCGGTTC GCAACGCATG ATTCTGGGAA ATGGCGGCCC AGGGCTTTCG AACCTGGATG TGGTGGCCTT TACCAAAGGG GCCAGTTCTG CGCTGGTGCT GCTTGCGGTC CTTTGCTTTG CCGGCGCGGC CCTGATCGCG AATACCCGGC GTCAAGCCGG CCGGCTGCAA TCAGCGTGA
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Protein sequence | MADEDHDAGR ADWAVLVAAS SGALLCFLNL SALNVALPAV ARSLHASPTQ ASWILLSYML VSTVCILSFG RLADLWGRRR LFLAGLWLFV AACAACALAP SAELMLASRI AQAVGAAGVM ANASALVGDA FGRRRMGLAL GVLAMVAALA QVVGPLAGGF VVSWWGWRVL FMLNVPIGLG VLAWSWKVLP HSAAAGAERF DLAGAALSLV GIGCVTYALS MAGTHGWAST PVWASMLAGL CAIALFSGVQ MRVASPLVDP SLFSDPARRT AYAGILLLSM TQAAPLLLMA LYLQACAGLQ PSQAGLRIAP VAFGMLMAAP LAGALTRRFR PESICVAGML LAGCALALLA ALLQPAIGTV QLSLCLWLLG LGIGSFVTPN NTSILQSVAP RRRGIANGVR STLQNTGIMI GTALTLSVAM AQLPSGSQRM ILGNGGPGLS NLDVVAFTKG ASSALVLLAV LCFAGAALIA NTRRQAGRLQ SA
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