| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5624 |
|---|
| Symbol | |
|---|
| ID | 7975236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 329160 |
|---|
| End bp | 330125 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796208 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002947482 |
|---|
| Protein GI | 239820297 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.614615 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCCTCTT TCCTCAAGAC ACTTCTTCTC GCTGCGTCGA TCTCCCTGGT CGGCGCCGCC
GCGCATGCCG ATGCGCCCAT CCGGCTGGTC ATCGGCTTTC CGCCCGGTGG CGCGCTCGAC
AGCCTGGCGC GTTCGCTGGC CGAGGACTTG CGCACCACGC TCAAGGAACC CGTGCTGGTG
GAGAACCGGC CCGGCGCCTC GACGCGCATT TCCATCGAGG CCGTCAAGGC CGCGCGGCCC
GACGGCCGCA CCATCCTGCT GGGCTCGACG CCGCCCTTCG TTCTCTTTCC GATGACCTAT
GCACGGCTGA ACTACGACGT CGACAAGGAC TTCATCCCGG TCGCGCACCT GGCGATCGTG
CCCAGTGTCC TTTCCGCCGG CGCAGACCAG CCGTTCAAGA CGGTTCCCGA ATACGTCGCA
TGGATCAAGA AGAACCCCGC CGGCGCCAGC GTGGGGCTGA CCAACCTCGG CGGCGGACTG
CACTTCAGCG TGCTGCAGCT GTCCAAGGCC ATCGGCGTGC CGCTCGCGCC GGTCACCTAC
AAGGGCGGCG CGCCGCTCGC GACCGACATC GTCGGCGGCC ACGTACCGCT CGCCGCCGAC
GCACTCGCCA GCCAGCTCGA GCTCCATCGC GCGGGCAAGC TGCGGATCCT GGGCGTTGCG
GGTACCCGCC GGCTGAGCTG GCTGCCCGAC GTTCCGACGA TCAAGGAGTC GGGCTACGAC
GCCTTCGACC GCGCCAACGC CGCCTATGCC GCCTTCGTGC CGGCAGGAAC GCCGAAGGAC
GTGGCCACCA GGCTGGAGGC GGCGCTGCTC GCCGCCATGC GCAATCCGCA GGTGCGTGCG
CAGGTCGATC GCATGGGCCT GGAGCCGACG GGGCTCCCTG GCGCGGAAGT GACGCGGATC
ATGAACGAGG ACCGCGCGTA CTGGCGCCCC ATCGTGAAGG CCTCGGGGTT CAGGAGCGAA
GACTGA
|
|---|
| Protein sequence | MASFLKTLLL AASISLVGAA AHADAPIRLV IGFPPGGALD SLARSLAEDL RTTLKEPVLV
ENRPGASTRI SIEAVKAARP DGRTILLGST PPFVLFPMTY ARLNYDVDKD FIPVAHLAIV
PSVLSAGADQ PFKTVPEYVA WIKKNPAGAS VGLTNLGGGL HFSVLQLSKA IGVPLAPVTY
KGGAPLATDI VGGHVPLAAD ALASQLELHR AGKLRILGVA GTRRLSWLPD VPTIKESGYD
AFDRANAAYA AFVPAGTPKD VATRLEAALL AAMRNPQVRA QVDRMGLEPT GLPGAEVTRI
MNEDRAYWRP IVKASGFRSE D
|
|---|
| |