| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5623 |
|---|
| Symbol | |
|---|
| ID | 7975235 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 327638 |
|---|
| End bp | 329116 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796207 |
|---|
| Product | Amidase |
|---|
| Protein accession | YP_002947481 |
|---|
| Protein GI | 239820296 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.770654 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCCGC GCATCAATCA TTTGCGCATG AAAAAGTTTC CGCGTCTTCC GAAGTCTGAA
ATCTGCGAGC TGTCCGCCGT GGCGCTGCGC ACGCTGGTCG CGCAGCGAAA GCTCTCGCCG
GTGGAGATCA CCCAGGAAGT CCTGCGCCGC GCCGACGCCG TCCAGCCGCA GCTGAACTGC
TTCATCACGC TGTGCCACGA GCAGGCAATG GCGCAGGCCC GCGAGGCGGA AAGCGCCGTG
ATGAGGGGCG AGCCGCTGGG CCTGCTGCAC GGCCTGCCCT TCACGGTGAA GGACATCGTC
GACACCGCGA ACGTCAGGAC GACCTACGGT TCGCTGCTGC ATCGCGACCA CGTCCCCACG
CAGGACGCCG TGGCCGTGGC GCGCATGCGC CAGGCCGGCG CCATCCTCAT CGGCAAGACG
ACCACCTCCG AGTTCGGCGC CAAGTGCCTC ACCGACGCGC CCCTGTTCGG AAGCACCCGC
AACGCATGGG ATGCGACGCG CACGAGCGGC GGCTCGAGCG GCGGGGCGGC CGCATCGATT
GCGGCGGGCA TCGCGCCGCT GGCCATTGCC ACCGACGGCG GCGGCTCGAC GCGCATTCCC
GCCGCCTGCA ACGGCGTGGT CGGCCTGAAG CAGAGCCTGG GCGTGGTGCC CCACAGCCAG
GTGCAGGATG CCTTCGGCAA CTACACCTAC GTGACACCCA CCACGCGCAA CGTGGCCGAC
ACCGCGCTCA TGCTGCAGGC CATGACCGGC GCCCATGGGT CCGATCCCTG GTCACTGGGT
GTGCCGGCGC AGCCTTACTT CGACGCGCTG CAGCCCGGCG GCGATCTGCG CGGCAAGCGG
ATTCTTTATT GCGCAACACC CGCGGGACGC CCGATCTCCG CCGACGTCGC CGCCGCCTTC
GAAGCCGCGC TGGCCACCTT GCGTTCGATG GGCGCGCAGC TCGAAGAGAT GCCCGGCGAC
GGCTATGACG TCGAGCCGGT GTGGCGGGTG ATCAACCACA CCAGCTGGCG CGGCCGCTTC
GCGCCGCTGG CCGCGGCGCA TGCCGACCAG CTGAGCCCGT CCCTGCTGCA GCAGCTCGCG
CTCGCAGAGC ACGTCGACGG GGTCACCTTC CAGCAGGCCA TGTTTGCCAG GACCGCGCTC
TTTCGCAAGG TTCAGGCCCA GCTGGAGAGC CACGACTTCA TCTTCACGCC GACGCTCTCG
CGCACGGCGC TGCCGATCGA CCAGGACCTG TTCGGCAGCA TCGAGATCGA TGGCGAGGCG
TATGCCGAAG TGCGAGCGAA CTGGTTTCCG TGGACGATGC CCTTCAACCT CACGGGCCAC
CCCGCCATCA GCCTGCCGTG CGGTGCGGGC CGCGATGGCC TGCCCATCGG CATGCAGCTC
GTCGGCCGGT TCCGCGAGGA CCAGCAGCTG CTGCAGGCCG CGTCGTCCTT CGAAGCCGCG
CACCGGCCGG CGAACGCGCT GCCGACCCTC GCTTTCTGA
|
|---|
| Protein sequence | MLPRINHLRM KKFPRLPKSE ICELSAVALR TLVAQRKLSP VEITQEVLRR ADAVQPQLNC
FITLCHEQAM AQAREAESAV MRGEPLGLLH GLPFTVKDIV DTANVRTTYG SLLHRDHVPT
QDAVAVARMR QAGAILIGKT TTSEFGAKCL TDAPLFGSTR NAWDATRTSG GSSGGAAASI
AAGIAPLAIA TDGGGSTRIP AACNGVVGLK QSLGVVPHSQ VQDAFGNYTY VTPTTRNVAD
TALMLQAMTG AHGSDPWSLG VPAQPYFDAL QPGGDLRGKR ILYCATPAGR PISADVAAAF
EAALATLRSM GAQLEEMPGD GYDVEPVWRV INHTSWRGRF APLAAAHADQ LSPSLLQQLA
LAEHVDGVTF QQAMFARTAL FRKVQAQLES HDFIFTPTLS RTALPIDQDL FGSIEIDGEA
YAEVRANWFP WTMPFNLTGH PAISLPCGAG RDGLPIGMQL VGRFREDQQL LQAASSFEAA
HRPANALPTL AF
|
|---|
| |