| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5611 |
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| Symbol | |
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| ID | 7975223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 318308 |
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| End bp | 319210 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644796195 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002947469 |
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| Protein GI | 239820284 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACATCA AGACGCTGTA CACCTTGGTC GCGATCGCTG ATCGAGGAAG CTTCGTGGAG
GCGGGCAATA GCATCGGCCT TTCACTGTCC GCGGTAAGCA TGCAGATGCG TGCTCTCGAG
GAAGAGCTCG AGAGCATGAT CTTCGATCGC AGCCGTCGTC CGCCGGTCCT GACCGATGCG
GGGTTGGCCC TGGTGCATCG CGCACGCGAT CTGCTTGCCC ATTGGGAGAG CATGAGCGCT
TCGCTCAAGA AGGGCACGGC GGTCGGGTTG CTGAAACTGG GAAGCGTTCA CACCGTTGCC
TCAGGCGTAT TGCCGCTGGC GCTGCGTCAC CTGCAACGAC AAGGCCATGG CCTTGAGGTA
CACGTCACCA CCGGCCTGAC GCATGACCTG GAGCGAGCTG TCTACCACCG GCAGTTGGAT
GTGGCCCTGG TCACCGAGCC GGAGCTTCCA CGAAGCGGCC TCGACTTTCT ACCATTCGTC
GACGAGGCGC TCGTGGTCAT CGCACACAAA TCCGCAAAAG GGGCGAGCGA TCAGGAAGTA
CTCGAAGGAA CGCCGTATGT CCGCTTCAAT CGATCGGCCC GGGTGGGCAA CCTCGTTCAA
GAGGAGATCG TCCGCCGGCA GATCACTGTC CGCTCGACCA TGGAGATCGA CAACCTTGAA
GGTGTCATCG CCATGGTCGC CAATGGCCTC GGCGCGTCGG TTGTTCCGGC TCGCGGGGTG
AAGAATGAAT TTCCATCCAC CGTTCGAGTG ATTCCCTTCG GCAATCCGAC AGTGACTCGT
CGATTGGGAA TGCTCGCCCC GAAGGAGAAC CCGAGGTCGC ACTTGTGTCA GTTGCTTCTG
GAAGCGCTGC AGGCTGTCAC CACCGGTCCT GACGAACTGG TTCGAAAGGT CGGCTCCGCC
TAA
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| Protein sequence | MDIKTLYTLV AIADRGSFVE AGNSIGLSLS AVSMQMRALE EELESMIFDR SRRPPVLTDA
GLALVHRARD LLAHWESMSA SLKKGTAVGL LKLGSVHTVA SGVLPLALRH LQRQGHGLEV
HVTTGLTHDL ERAVYHRQLD VALVTEPELP RSGLDFLPFV DEALVVIAHK SAKGASDQEV
LEGTPYVRFN RSARVGNLVQ EEIVRRQITV RSTMEIDNLE GVIAMVANGL GASVVPARGV
KNEFPSTVRV IPFGNPTVTR RLGMLAPKEN PRSHLCQLLL EALQAVTTGP DELVRKVGSA
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