| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5608 |
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| Symbol | |
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| ID | 7975220 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 315648 |
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| End bp | 316373 |
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| Gene Length | 726 bp |
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| Protein Length | 241 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796192 |
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| Product | HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like) |
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| Protein accession | YP_002947466 |
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| Protein GI | 239820281 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01428] 2-haloalkanoic acid dehalogenase, type II
[TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCCTGC AAGATTTCAA GGTCCTCACC TTCGACGTGG TCGGCACGCT GATCGATTTC
GAGGGCGGCA TGCTCGCCTA CCTGCGCTCG GCGGTGCCCG GTGCGCGCGT GAGCGACGAC
GAATTCCTGG CCGCCTACCG CCAGGCCCGC GCCGACGGCC ACGCCGGCTG GTACCCCGAC
GACCTGGAGC GCTGCTGGCA CGCCATCGCC CCCGCGCTGG GCCTGCCCGA CAGCGATGCG
CTGGCCCGTG GCCTGCGCGA TTCGGTGGCG CAATGGCCGG CTTTCCCGGA CTCCGTGGAG
GCGCTGCAGC GGCTGCGCAG GCGCTTCAAG CTGGTCACGA TGACCAATGC ACAGCAATGG
GCGCTGGCCC ACTTCGACAA GACGCTGGGC TCGCCCTTCG ACATGCTGCT CAGCTGCAAC
GATGCGCTGT GCGAAAAGCC CGACGCCCGC TACTTCGCCT ATGCGCGCGG CCGCTTCGAG
GGCGCCTGGG GCTTCAGGCA GGCCGACAAC CTGCACGTGG CGCAAAGCCA GTACCACGAC
ATCGGCATCT CCAAAGAGTT GGGCATCGCC ACCTGCTGGA TCGAGCGCCG CCATGCGCAG
AAGGGGTCCG GAGGCACCAT CGAGTCGAAA CGCACCGAGC CCGACTACCA CTTCCGCACG
CTGGCTGAAC TGGCGGACGC GGTTGGCCGG CCGCACGATC AACCGCTTAC GGCCAAACCG
CGGTAG
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| Protein sequence | MSLQDFKVLT FDVVGTLIDF EGGMLAYLRS AVPGARVSDD EFLAAYRQAR ADGHAGWYPD
DLERCWHAIA PALGLPDSDA LARGLRDSVA QWPAFPDSVE ALQRLRRRFK LVTMTNAQQW
ALAHFDKTLG SPFDMLLSCN DALCEKPDAR YFAYARGRFE GAWGFRQADN LHVAQSQYHD
IGISKELGIA TCWIERRHAQ KGSGGTIESK RTEPDYHFRT LAELADAVGR PHDQPLTAKP
R
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