| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5605 |
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| Symbol | |
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| ID | 7975217 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 310443 |
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| End bp | 313397 |
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| Gene Length | 2955 bp |
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| Protein Length | 984 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644796189 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_002947463 |
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| Protein GI | 239820278 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCCC GACTGACCCA CAGCTCCATT GCCGCCAGTG GCCGGACGAT CCGCTTCTGG
TACGACGGCC AGGCCATCGA CGGCCTCGAG GGCGAGACCG TGGCAGCTGC ACTGGCGGCC
AGCCACATCC GCCAGATGCG GCACACGCGC GGTGGCGGGC GCCGGGGCCT TTATTGCGGC
ATGGGGGCGT GCTTCGACTG CCTGGTGACG ATCGACGGCG TGGCCAGCCA GCGCGCCTGC
CTGGCCAAAG TGGCGGAGGG CCAGCAGATC CGCTCGGCCA TGCCGGCGGG CACGCCGGCC
GACCCCCTGC AGCCGCTCAC GCCAGCCGCC GATGCGGCGC CGGCCGCACA AAACATCGAC
GTGCTGGTGG TGGGCGCCGG GCCGGCCGGC CTGTCGGCGG CACTGGCCGC GCGGCAAGCC
GGCGCCAGCG TGCTGGTGCT CGACGAGCGG CTGCAGTCCG GCGGCCAGTT CTACAAGCCG
CTGGCCCCCT CGCACCACGC GCCCCGCCCC GTCGATCGCC AATTCGCGGA GGGCCTCGCG
CTCGAGCGCG ACGTGCGCGC GGCCGGCGTG GCCATCGCCC AGGGCGCGCA GGTCTGGGCC
GCGTTCTCGG CGCATGAAGT CAGCGCGCTG ATCGCCGGGC GCGCCACCCA CATCCGGTGC
CGGCAACTGG TGGTCGCACC AGGTGCCTAC GAGCGACCCG TTCCCATTCC GGGATGGACG
CTGCCCGGCG TGATGACCAC CGGCGCCGCG CAGACGCTGG CGCGGGCCTA CCGCGTCGCG
CCGGGCCGGC GCGTGGTGAT CGCGGGCAAC GGTCCGCTCA ACCTGCAACT TGCCGCGGAA
CTGCTGGCCG GCGGTGCGCA CGTGGTCGCG GTGCTCGAAT CGGCGGCCCG CCCCTCGGTG
CGCGACTGGC GCCACCTGCT GACCACTGCC CGCACCGCCC CCGACCTGGT GCGCCAGGGC
TGGGGCTACC TGCGGCAGCT GCGCGCACAC AAGGTGCCTG TGCTGTGGCG CCACGCGGTG
GCAGCGGCCG AAGGCGACGG CGAATTGCAG GCGGTGCATG TGGTTGAACT GGACGCACAG
GGCCAGCGCA CGGCAGCGCC GATGCGGCGC TTCGAGGCCG ACACGCTGTG CCTGGGCTAC
GGCTTCATCC CTTCGACCGA ACTCGCACGC ATGCTGGGCT GCGAGCATCG CGTGGTCGAC
CGGCACCTCG GCTATCTCGC GACCGTGACA GCCGGCGACG GCGCCACCAG CCTGGAAGAT
GTCTTCGTGG TCGGCGACGG CGCGGACCTC GGCGGTTCGC GCGTCGCGCT GGCACGCGGC
ACGCTGGCCG GGCGCTCCGC GGCGCGCAAG CTCGGACTGC CGGCAAAGCC AACGGCCGTG
CCCGACCGGA CGGCGGCCCA GCTCCAGCGT GCCGAGTGCT TCCAGCAGGC CCTCTGGTCG
CTGTACAAGG CGCCGCCCGT GGCACTGGCT GCCGTCAGCG ACGACACGCT GCTGTGCCGC
TGCGAAGAAA TCAGCTTCGG CTCCGCGCGC GAACAGATCC GCGCGGGCCG CGACACGCTG
GCAGCGCTCA AGCGCAACAC GCGGCTGGGC ATGGGCCGCT GCCAAGGGCG CTACTGCGCG
GTCACGGCCG CCAAGCTGGT GAGCGAGATG ACGGGGCGGC CGCTGGAGGT CGAGCAGTAC
TTCGCGCCGC GCCCGCCGGC CAAGCCCGTG CCGGCCGGCG CGCTGGGCTT CGAGAAGCCC
GAATGGGGCG GCCACAAGCC GGCCATCACG CCGAATCTCG CGCGCCCGGT CGAACACGCG
CCCTTCGAAA CCCTGCGCAC CGACGTGCTG GTCATCGGCG CCGGCGTGCT CGGCTCCTGT
CTCGGCCACT ATCTGTCGAA GGCGGGCCAG GACGTGACGG TGGTCGACCG CGACGATATC
AACCTCCAGG CCTCGGGCGC CAATGCCGGC AGCCTGCACG TGCAGCTGCT GTCCTTCGAT
TTCGGCGCCA AGGCGCAGGA AGGCGGCGGT CCGGCCGCGG CCACGCTGCC GCTGGGCCCG
GTGTCGGTGC GGCTGTGGCA GGAGATCGAG GCCGAGAGCG GCGAAGACCT GGAGATCAAG
ATCACTGGCG GACTGATGGT GGCCGACACC GAGGCCGGCC TGCGCTTCAT CGAGGCCAAG
GCCGCGCTGG AGCGCAGCCA CGGCATCGAG GCGCAGGTGA TCGACGCGGC CACGCTGCGC
CGCCTGTCGC CCGCGCTGTC GCCGCAGCTG CTGGGGGCCG AACTCTGTCC CATGGAGGGC
AAGATCAACC CGCTGCGCGC GACCTATGCC GTGGCTTCTC TCGCGCAGCA GCAGGGCGCG
CGCTTCCTGC GAGGCTGCGA TGTACGCCGG ATCGAACGCC GTCCGGGCGA CGGCGGCGGC
TTCGTCGTCC ACACCTCGCG CGGCGTCATC CACGCGGGCC GCCTGGTGAA CGCCAGCGGC
GCATGGTCCA GCACGGTGGG CGACATGCTC GGCGTGCAGA TTCCCGTCAA GGGCGCACCG
CTGCAGATGA TCGTGACCGA GCCCGCGCCG CCTCTGGTCA ACCACCTGGT GGCGCATGCC
GACCGGCACC TGAGCCTCAA GCAGGCGGCC ACCGGCGGGC TGATCATCGG CGGCGGCTGG
ACCGCGGCCT TCCATGAAGG CATGCGGCTG AACCGCGCCG AACGCGCCAG CATCGAGGGC
GGGCTGTGGG TTGCGCGGCA GGTGCTGCCG GCCGTGTGCG GCCTGCACAT GGTGCGCTGC
TGGGCCGGCA TGAACGTCAA CATCGACGGC GCGCCGATCC TGGGCGACGT GCCCGGCGTG
CCCGGCTTCT ACAACGCCGT CACCTCCAAC GGCTACACCC TGGCGCCCAT CGCCGCGCGC
CTGGTCGCCG ACCTGATCGT GCGCGGGCGC ACGGACATCG ACATCACGCC TTTCCGGATC
GACCGGTTTC TTTGA
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| Protein sequence | MSARLTHSSI AASGRTIRFW YDGQAIDGLE GETVAAALAA SHIRQMRHTR GGGRRGLYCG
MGACFDCLVT IDGVASQRAC LAKVAEGQQI RSAMPAGTPA DPLQPLTPAA DAAPAAQNID
VLVVGAGPAG LSAALAARQA GASVLVLDER LQSGGQFYKP LAPSHHAPRP VDRQFAEGLA
LERDVRAAGV AIAQGAQVWA AFSAHEVSAL IAGRATHIRC RQLVVAPGAY ERPVPIPGWT
LPGVMTTGAA QTLARAYRVA PGRRVVIAGN GPLNLQLAAE LLAGGAHVVA VLESAARPSV
RDWRHLLTTA RTAPDLVRQG WGYLRQLRAH KVPVLWRHAV AAAEGDGELQ AVHVVELDAQ
GQRTAAPMRR FEADTLCLGY GFIPSTELAR MLGCEHRVVD RHLGYLATVT AGDGATSLED
VFVVGDGADL GGSRVALARG TLAGRSAARK LGLPAKPTAV PDRTAAQLQR AECFQQALWS
LYKAPPVALA AVSDDTLLCR CEEISFGSAR EQIRAGRDTL AALKRNTRLG MGRCQGRYCA
VTAAKLVSEM TGRPLEVEQY FAPRPPAKPV PAGALGFEKP EWGGHKPAIT PNLARPVEHA
PFETLRTDVL VIGAGVLGSC LGHYLSKAGQ DVTVVDRDDI NLQASGANAG SLHVQLLSFD
FGAKAQEGGG PAAATLPLGP VSVRLWQEIE AESGEDLEIK ITGGLMVADT EAGLRFIEAK
AALERSHGIE AQVIDAATLR RLSPALSPQL LGAELCPMEG KINPLRATYA VASLAQQQGA
RFLRGCDVRR IERRPGDGGG FVVHTSRGVI HAGRLVNASG AWSSTVGDML GVQIPVKGAP
LQMIVTEPAP PLVNHLVAHA DRHLSLKQAA TGGLIIGGGW TAAFHEGMRL NRAERASIEG
GLWVARQVLP AVCGLHMVRC WAGMNVNIDG APILGDVPGV PGFYNAVTSN GYTLAPIAAR
LVADLIVRGR TDIDITPFRI DRFL
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