| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5589 |
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| Symbol | |
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| ID | 7975201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 297040 |
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| End bp | 298296 |
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| Gene Length | 1257 bp |
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| Protein Length | 418 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796173 |
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| Product | D-amino-acid dehydrogenase |
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| Protein accession | YP_002947447 |
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| Protein GI | 239820262 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0932448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAACA CTGTTGCCGT GCTCGGCGCC GGCATCGTCG GCGTGTCGTG TGCCCTCGAG
CTCCAGCGGC GGGGTTTCGA CGTGACGGTC TTCGACCGCA CCGCCCCGGG CCGTGAAACC
TCCTACGGCA ATGCCGGCGT GATCGCCCGC AGCTCGCTGA TGCCGTTCAA CCATCCGGGG
TTGTGGTCCT CGCTTCCCAG ACTGCTGAAG AACAGCTCCG CGGGCTTTCG CTACAACCCG
CTTTTCCTCG CGAAGAACCT GCCATGGGCG CTGAAGTTCC TGGCCAACGC GCGCGCGGCG
GTCTTTCATG AAACGACCGC GGCGCTCGAT GCACTGATCC GGCTTTCGAC GCAGGAGCAC
CTGCGGCTGC TGGGCGGAGC GGGCGCGGCG CACCGCCTGC GCACGAACGG GTGGCTCTTT
CTCTACCGCA GCGAGGAAGG CTTTCTCGGC GGCCAGCGCT CGCGGGACAC TTTCAAGAAA
TTCGGCATTG CAACGCAGCT GCTCGATGCG CGAGAGCTCG CGCAGCTCGA GCCGCACCTG
AAGCCGCTGT TCCCGCGCGC GCTGTGGATC CAGGACACGG CGTCGGTGGA CAGCCCTGGC
CAGGTGGTCG AGGCCTATGC CAGGCTTTTC ACCGCGCGCG GAGGCCGCAT CCGGCAGGCA
TCGATCGGCG GCCTGCGCCG ATCGGATGCA GGCGATGCCT GGCAGCTCAG CGAAGACGGC
GGCACGCTCC ACGAGGCCTC GCGCGTCGTG CTCGCGCTGG GGCCGTGGAG CCGGGAGTTC
GCGAAGAAGG CCTTGGGTCT GTCGGTGCCG ATGGCGTACG AGCGCGGCTA CCACATGCAC
TACGGGGCCG CCGGCGGCGC CTCGCTCGGG CGGCCGGTCT ACGACACCGG CGGCGGCTAT
GTGCTGTCGC CGATGGAACA AGGCCTGCGC CTGTCCACCG GCGTGCAATT GACCGATCGC
GAGGCGCCCC GGAATCTCGC GCAGCTCGAC CTGGCGGAGC GCGCGGCGCG CGAGGCGTTT
CCGCTCGAGG AGCGCCTTGA CAAGGAAGCC TGGCTCGGCA GCCGCCCCAC GCTGCCGGAC
AGCCGCCCGG TGATCGGCGA ATGCCCGGGC CGCCCAGGCC TTTGGCTCGC CTTCGGCCAT
CAGCACATCG GCTTCAACAC CGCTCCCGGA ACGGCCGCGC TCCTGGGCGC AATGATGGCC
GGCGAAGCCT GCGCCTTCGA TCCCGCGCCG TTCCGGCCTT CACGCTTCCT GGGCTGA
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| Protein sequence | MKNTVAVLGA GIVGVSCALE LQRRGFDVTV FDRTAPGRET SYGNAGVIAR SSLMPFNHPG
LWSSLPRLLK NSSAGFRYNP LFLAKNLPWA LKFLANARAA VFHETTAALD ALIRLSTQEH
LRLLGGAGAA HRLRTNGWLF LYRSEEGFLG GQRSRDTFKK FGIATQLLDA RELAQLEPHL
KPLFPRALWI QDTASVDSPG QVVEAYARLF TARGGRIRQA SIGGLRRSDA GDAWQLSEDG
GTLHEASRVV LALGPWSREF AKKALGLSVP MAYERGYHMH YGAAGGASLG RPVYDTGGGY
VLSPMEQGLR LSTGVQLTDR EAPRNLAQLD LAERAAREAF PLEERLDKEA WLGSRPTLPD
SRPVIGECPG RPGLWLAFGH QHIGFNTAPG TAALLGAMMA GEACAFDPAP FRPSRFLG
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