| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5588 |
|---|
| Symbol | |
|---|
| ID | 7975200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 295227 |
|---|
| End bp | 296978 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644796172 |
|---|
| Product | thiamine pyrophosphate protein central region |
|---|
| Protein accession | YP_002947446 |
|---|
| Protein GI | 239820261 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.130518 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGGTG CAGACGTGCT CGTGCAGATG TTGATCAACT ACGGTGTCGA CGTACTTTTC
GGTGTGCCCG GCGACACCAA CGTGCCGTTC TACGAGGCGC TGCAGCGCCG CCACGGCGAC
ATCGAGCACG TCATGGCCCG CGACGAACGC TCGGCCGGCT ACATGGCCGA CGCCTATGCG
CGGCTGACCG ACAGGCCCGG CATCTTCGAA TGCCCCTCGG GCGCCGGCGC GATGTACTCG
CTGCCGCCGC TGGCGGAATC GAATGCTTCC TCGGTGCCGG TCATCCTGCT GACCATCGAC
CTGCCGCTGC CCGGCGAAGG CCGCGGCATG ATCACCGAGC TCGACTGCGC CAGGCTGTTC
GAACCCGTCA CCAAAATGTC GGTGCAGGTG AAGTCGCCCG AGAAGCTGCC CGAGATCGTT
CGCCGCGCAT TCCGCGTGGC CTGCTCCGGC ACGCCCGGCG CCGTGCACCT GCAGATCCCG
GAAGACATGC TGCTGGCGGA GATCGACCCC GACGCCATCT CGCTGCACGC CGAGCCCGAA
TGCAGGACCT TCCCGGCCTT TCCGATGGCG CCAGCGCCCG GCAAGGTGGG CGAGCTTTTC
GCGCTGCTGC GGAAGGCCTC GAAGCCGCTC TTCGTCGCGG GCGGCGGCGT GAACCGCTCC
TGCGCCGGCA GCGCGCTCAC CGAGGTGGCC GCGAAGCTCA ACGTGCCCGT GGTCAACACG
ATCACCGGCC AGGGCGCGCT GCCCGACGAT CACCGCCTGG CCATCGGCGT CATCGGCGAC
AACGGCTTTC ATCCGCATGC CAACCGCGCG CTCGAGGAAT CGGACCTGGT GATCTTCGTC
GGCTCGCGCA TGGGCTCCGT CGTCACCGTG GGCTGGACCT TCCCCAAGTC GACGCTCAAC
AAGCGCGTGG TGCAGATCGA CATCAACCCC GAGCGCCTTG CCAACAACTA CGAGAACCTG
CTGTCGATCG CCGCGGATGC GCAGCTGGTG TTGAAGCAGA TCCTGAACGA GGCGCCCGTC
GATTTCGATG GCTCGAAGCA CACGCCCTGG ATCGACCATC TCAACACTTA CCGGGCGAAC
TTCTGGGACC ATGCCGAAGG CGTGCTCTCG CTGAGTGACG TGCCGCTGCG GCCCGAGCGC
GTGGTGCGCG AATTCGGCAA GCAGCTCGAG AAGTACGGCC AGGCCGTGCA CATTCTTTCG
GATGCCGGCA CACCCACGCC CTACATGACG CGCTTCCTGC GCATCGGGGA CCGCCGCACG
CGCTTCGTCA TTCCGCGTGC CTTCGGCGGC CTGGGCTCGG CGATTCCCGC GGTGGTCGGC
GCCTGGTATG CCGACAAGAC CCGCCGGCCG ATCGGCATGT TCGGCGACGG CTCTTTCAAC
ATGGCCGTCG GCGAGCTCGA GACGCTGGTT CGCAAGAAGG TGCCGGCGCT GCTGATGCTG
TTCAACAACG GCTGCTTCGG CTGGATCAAG GGGCTGCACC GGCTCAAGGG CCACGACGAA
TGCTTTGGCG TGGACTTCCT GCCGCCGCGC GGCCAGGCCA TTGCCGAGGC CTTCGACATC
AAGGCCTGGA CGGCCGCCAC GCCCGGCGAA CTGGTGCAGG CGCTCGATGA AGCCTTCGCG
TATGACGGCC CCTGCCTCAT CGACATCCAC ATCGAATCGC TGGCGGACCG CGTGCCGCCC
GTGTATTCAT GGCTGGCAAA AAAGAAGCTC GATCCGCTGG CGCTGGCGCC GGAAGACGTG
GCCTATCTGT AG
|
|---|
| Protein sequence | MRGADVLVQM LINYGVDVLF GVPGDTNVPF YEALQRRHGD IEHVMARDER SAGYMADAYA
RLTDRPGIFE CPSGAGAMYS LPPLAESNAS SVPVILLTID LPLPGEGRGM ITELDCARLF
EPVTKMSVQV KSPEKLPEIV RRAFRVACSG TPGAVHLQIP EDMLLAEIDP DAISLHAEPE
CRTFPAFPMA PAPGKVGELF ALLRKASKPL FVAGGGVNRS CAGSALTEVA AKLNVPVVNT
ITGQGALPDD HRLAIGVIGD NGFHPHANRA LEESDLVIFV GSRMGSVVTV GWTFPKSTLN
KRVVQIDINP ERLANNYENL LSIAADAQLV LKQILNEAPV DFDGSKHTPW IDHLNTYRAN
FWDHAEGVLS LSDVPLRPER VVREFGKQLE KYGQAVHILS DAGTPTPYMT RFLRIGDRRT
RFVIPRAFGG LGSAIPAVVG AWYADKTRRP IGMFGDGSFN MAVGELETLV RKKVPALLML
FNNGCFGWIK GLHRLKGHDE CFGVDFLPPR GQAIAEAFDI KAWTAATPGE LVQALDEAFA
YDGPCLIDIH IESLADRVPP VYSWLAKKKL DPLALAPEDV AYL
|
|---|
| |