| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5580 |
|---|
| Symbol | |
|---|
| ID | 7975192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 286566 |
|---|
| End bp | 288665 |
|---|
| Gene Length | 2100 bp |
|---|
| Protein Length | 699 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644796164 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_002947438 |
|---|
| Protein GI | 239820253 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0190821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCGC CCTCTTCCCC GGTCGCCCCC ACCCTTCCGG GACTGCCCTC GGGCGTTGAA
GAGAGCAGCG TCTTTCGTTC GCTCTTCGTT TCCTACCCTG ACTCGCTGCT GCTGGTCGAC
CAGGCCGGCC GCATCGTGCT GGCCAACCCC GCGGCAGCCA GCCTGCTGGG CTACGCGGTC
GACGAGCTGG TGGGCCTGAA CGTCGATGCG CTGGTGCCCG ACAGCATCCG CCCGCGCCAC
GCCTCCTACC GCGAGGCCTA CGGCCGCGCG CCGCGCCCGC GGCCCATGGG CACGCAGATG
GAGCTGGTCG CCAAGCGCAA GGACGGCAGC GAGGTGATGG TCGAGATCGC GCTCAGCCCG
CTGCAGAGCC AGGGCCTGCC CTTCGTGGTG GCCGCCATCC GCGACATCGG CGCCTATCCC
CGCGTGAAGC AGGCGCTGCA GCGGGCGCGC TACAGCGACT ACCTCGCGCA GCTGGGCCGC
CTGGCCGTGG ACACCCGCGA CCTGCAGGTG GTGCTCGACC ACGTGCCCGC CATGGCCGCG
GAAGCGCTGG AGGTCGAGGT GGCCGTGGTG CTGCTGCTGG AGAACAGCCG CCTCGAATTC
CGCGTGGCGA GCGGCGTGGG CCTGGTGCCC GGAGAAGAAA TCGGCGCGCG CATTCCCAGC
CATGCGAACA CGCCGCCGGG TTTCGTGTTT GCCGAGGGGC GGCCGGTGGT GGTGGCCGAC
TACGGCAACG AGCGGCGCTT CGCGGTGCCG CAGGCGTATC TCGATGCCGG GCTGGTCAGC
GCGCTGGCCG TGCCCTTCTA CGACCGGGGC CGGTTCATCG GCGTGCTGGC CGTGCGATCG
CGCGAGGCCA AGCGCTTTGG CGACGAGGAG CTGCGCTTCC TCGAATCGCT TTCCAACCTG
CTGGCCACCA GCCTGCAGCG GGTGCAGACC GAAGAGGCGC TCAGCCATGC CCAGCGGCTC
GAAAGCGTCG GCCAGCTCAC GGGCGGCATT GCGCACGACT TCAACAACCT GCTCACCATC
ATCCAGGGCA ACCTGCAGGT GCTCGAAGAG CTGCCCGCCA TTGCACAGGA CGGCTACGCC
CAGCAGCTGG TGGGCGCCGC GGCGCGGGCC TCGCGGCGCG GCGCCGAGCT CACGGGCAAG
CTGCTGGCCT TTTCGCGCCG GCAGATGCTG CAGCCCAACG CGGTGGACAC GCATGCGATG
CTGCATTCGC TGGCCGACAT GTTGCGGCGC ACGCTCGACC AGCGCATCGG CATCGCGATC
GATGCGGCGC CGGGCTGCCC GCCGGTGCTC GCCGATCCCG GACAGCTCGA ATCGGCATTG
CTGAACATTG CCATCAACGC GCGCGACGCC ATGCCCGAGG GTGGCACGCT GCACTTTCGC
GCCGAGGCCT GCGGCGCGCT GCCGCCCGAG GTGCACAACG AGCTCAGCGA CCAGGATGCG
CACGGCAGCT TCGTTGCCAT TTCGGTGGCC GACAGCGGCA CGGGCATGAC CGAGGAAGTG
AGGGAGCGCG CCTTCGAGCC CTTCTTCACG ACCAAGGAAG CCGGCCGCGG CACCGGCCTG
GGCCTGAGCA CGGTGTACGG CTTCGTGAAG CAGTCCAAGG GCGCCGTGGC CATCGAAACG
CGGTCGGGCG CGGGAACGAC CGTGACGCTC TATCTTCCCC AGCTGTACGA CCCGGCGCCT
GCGGCCGCAG AGGAGGAAGA CGAAGAGCAG GCCATCCCCG CCGGCCTGCG GGTCATGCTG
GTCGAGGACG ACGCCGAGGT GCGCCGGGTG GTTCACACCT TTCTCGCGAC GCTCGGCTGC
AGCGTGGTGA CCGCGGCCAA TGCCGAGCAG GCGCTGCTGA GCATGGAAAC GGATGCGGAT
TCCTTCGACG TGCTGCTCAG CGACATCGCG CTCGGAGCCG GCATGCGCGG AACCCGGCTC
GCCGCCGAGG CGCAGCAGCG CTTTCCGCGG CTCGCCATTC TCCTGATGTC CGGCTTTTCG
TCGGAGCTGC TCGACGCCGA CCGCGACGTG CCGCAAGGCT GGGAGCTGCT GCGCAAGCCC
TACACGCGCG GCGAACTCGC GCGCGCCCTG GCCCGGGTGC TGGCGGCCGC ACGGCCCTAG
|
|---|
| Protein sequence | MNPPSSPVAP TLPGLPSGVE ESSVFRSLFV SYPDSLLLVD QAGRIVLANP AAASLLGYAV
DELVGLNVDA LVPDSIRPRH ASYREAYGRA PRPRPMGTQM ELVAKRKDGS EVMVEIALSP
LQSQGLPFVV AAIRDIGAYP RVKQALQRAR YSDYLAQLGR LAVDTRDLQV VLDHVPAMAA
EALEVEVAVV LLLENSRLEF RVASGVGLVP GEEIGARIPS HANTPPGFVF AEGRPVVVAD
YGNERRFAVP QAYLDAGLVS ALAVPFYDRG RFIGVLAVRS REAKRFGDEE LRFLESLSNL
LATSLQRVQT EEALSHAQRL ESVGQLTGGI AHDFNNLLTI IQGNLQVLEE LPAIAQDGYA
QQLVGAAARA SRRGAELTGK LLAFSRRQML QPNAVDTHAM LHSLADMLRR TLDQRIGIAI
DAAPGCPPVL ADPGQLESAL LNIAINARDA MPEGGTLHFR AEACGALPPE VHNELSDQDA
HGSFVAISVA DSGTGMTEEV RERAFEPFFT TKEAGRGTGL GLSTVYGFVK QSKGAVAIET
RSGAGTTVTL YLPQLYDPAP AAAEEEDEEQ AIPAGLRVML VEDDAEVRRV VHTFLATLGC
SVVTAANAEQ ALLSMETDAD SFDVLLSDIA LGAGMRGTRL AAEAQQRFPR LAILLMSGFS
SELLDADRDV PQGWELLRKP YTRGELARAL ARVLAAARP
|
|---|
| |