| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5577 |
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| Symbol | |
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| ID | 7975189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 284502 |
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| End bp | 284924 |
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| Gene Length | 423 bp |
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| Protein Length | 140 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796161 |
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| Product | UspA domain protein |
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| Protein accession | YP_002947435 |
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| Protein GI | 239820250 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00018626 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAGATTC TCCTCGCCGT CGACGGCAGC GACTACACGG CCCGCATGCT CGACTACCTG
GCCGCGCACA AGGAATGGTC CAACGCGGGC CATGCGTTCA CGGTCTTCCA TGCGGTGCTG
CCGGTGCCCC ATCGCGCAGC CGCCTTCGCA GGGCCGGACC TCGTGCACAC CTACTACGGC
GACGAGGCAC GCGTCGTGCT GGAACCGGTG CGCGCCGCGC TGGCCGCGCA CGGCATCGAG
GCGGCCTTCG CCCACAAGGT GGGCCATCCT GCCGGCGAGA TCGCCGCCTT TGCGGAGCAC
GGAAAGTTCG ACCTCGTGAT CATGGGATCG CGCGGGCAGG GTGCGCTGAC GAACCTCGTG
CTGGGTTCGG TGGCGATGAA GGTGCTGGCC CGCTGCACGG TGCCCGTGCT GCTGGTGCGC
TGA
|
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| Protein sequence | MKILLAVDGS DYTARMLDYL AAHKEWSNAG HAFTVFHAVL PVPHRAAAFA GPDLVHTYYG
DEARVVLEPV RAALAAHGIE AAFAHKVGHP AGEIAAFAEH GKFDLVIMGS RGQGALTNLV
LGSVAMKVLA RCTVPVLLVR
|
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