Gene Vapar_5569 details

Gene Information

• Locus tag: Vapar_5569
• ID: 7975426
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 277514
• End bp: 277996
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644796153
• Product: protein of unknown function DUF395 YeeE/YedE
• Protein accession: YP_002947427
• Protein GI: 239820242
• COG category: [R] General function prediction only
• COG ID: [COG2391] Predicted transporter component

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.0380348
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACCCTCT TCACTTCGTT TCTTGCCGGC CTGGTGTTCG GCCTGGGCCT GATCGTCTCC 
GGCATGGCCA ATCCCGCCAA GGTGCTCGGC TTCCTGGATC TTGGCGGGCG CTGGGACCCG 
TCGCTTGCCT TCGTGATGGG CGGAGCGATC GCCGTCGGCG CCGTCGCGTT CGCGGTGGCC 
AGGCGGCGCA CGCGCTTCTT CCTCGGCGCG CCGATGCGGC TGCCGGCCTC GCGCGCGATC 
GATCGCCGTC TGGTCCTGGG CAGCGTGCTG TTCGGCATCG GCTGGGGCGT GGCGGGCTTC 
TGTCCGGGCC CGGGGCTGGT GGCCGCGGGC ATGGGGGAGG TGAAGGCGCT GGTCTTCGTC 
GCCGCGATGC TCGCGGGCAT GGCGGGGTAC GAGCTGATCG AGCGCAGGCG TTCGACAAGA 
AGCAGCATGA CCTTGCTGGA TGCTGACGAG CCCGCTCAGG TTCCGTTCAC TTGGCGGAAC 
TAG 

 

Protein sequence

MTLFTSFLAG LVFGLGLIVS GMANPAKVLG FLDLGGRWDP SLAFVMGGAI AVGAVAFAVA 
RRRTRFFLGA PMRLPASRAI DRRLVLGSVL FGIGWGVAGF CPGPGLVAAG MGEVKALVFV 
AAMLAGMAGY ELIERRRSTR SSMTLLDADE PAQVPFTWRN