| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5558 |
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| Symbol | |
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| ID | 7975415 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 260736 |
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| End bp | 262598 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644796142 |
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| Product | histidine kinase |
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| Protein accession | YP_002947416 |
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| Protein GI | 239820231 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.810149 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAAAG TCACGGCCAC CGGCTGCGAG AATCCGCAGC CAATGAACCT CGCACGTCGC
ATCGACCCGC GGCGCTCCAT GGCTGCCGCG ATCGGCTGGC TGCTGATTGC GCTCACGCTG
TGCCTGGCGC TCGCGGCCAA CCTGTGGCTG CGCAGCTTCG TGCGTGCGAC GCTGCTCGAG
CAGCACGGCC AGCGCCTGGA GGCCGCGGCC GAGCACGTCA GCGCCGAACT CGACACCGCG
CTGCTGCTGC GCCTGCAGGC CGTCAGCGTG GTGGCGGCCA TGCTGTCGGA GGACGTGCAG
CGCAGCGAAG GCGCACGCCT GAAGCGCTCG CTCGAGGCGG TGCGCCGCGG CGTGCCCGAC
CTGATCTGGC TGGCGGTGAC CGATGCCGAC GGCTTCATCG TCGCCGCCAC CGACGAACAG
GTGGTCGGCC AGAACGTCAA CCAGCACGCC TGGATCTCGC AGGGCCTGGA CGCCGCATGG
ATCGAGGAAG GCCGCTCGCC GCAGGAGCGC TTCCTGAAGC TCACAGCGCC TGTGCGCAAC
GCAGACGGCG CGATCATCGG CGTGGTGGCC GCGAACCTCC GCTGGAACTG GGTGCAGAAG
ATGATGGCCG AGATCCGCGC ATCGCCGGGC GAATGGCTGC TGATCGACCG CGACGGCATC
GTGCGCCACG GGCCGAGCGC GCTCCTGGGG CAGCGCTGGC AGGATGCCGG CGATCCGATC
ACGCCCTTCG ATCCCGTGGT CGCGGGCCTG GGCAACGACG GATCCGATCT GCCCATGCGC
ATCCGCACAA GGCGGCTGCT GGACAACCGG CCCTACCTGA TCGCGACCCC GCCCAATGCG
CGCGAGGGCA CGCTGCGCCG GCTCGGCTGG CAGGCCGTGG TGATCCAGCC GGTCGAATCG
GTCGCGGCGT TTGCGACCGC CATCGAATGG CGCATCTCGA TCGTGCTGAG CCTGCTGGGC
CTGGCCGCCG CGGTTGCGGG CATTGTCATG GCGCGCCGGC TCACGCGCCG TGTCAGCGTG
ATTGCCCATT CGGCCGACGC GGTGCTGGCC GGCAGCGCCA CGCGCATCGA GGTGCCGCAA
GGCGCCGATG AAGCCGCGCG GCTGGGCAGC GCGCTCGACC GGCTGCTGGA CACGCTGCAG
CGCGAACGCG ACGAGCTGCG CCGGCTCAAC GCCGAGCTGG ACGAACGCGT GCGGCAGCGC
ACCGAAGAGA TCAATCGGCT CGCGCAGGAA TCGCGCGATG CGGCGGTGGT GCGCGAGCGG
CTGCGGCTCG CGCGCGGACT GCACGACACG CTGGCGCATT CCATGATGGC AATGCTCACC
GAAATCCGCG TGCTCAAGCA CCTGGCATCG AACCGGCCCG ATGCGCTGCC GAACGAGCTG
GTGCGGGCCG AGCGCGCAGC GCGCGACGGA CTGGACGAGG CACGCCGCGC GATCGACCAG
CTGCGCAGCA ACCCGGTGCG CGACATCGGG CTGGGCGCAG CGTTGGCCGA GCTGGCCAAG
AGCCTGGGCG AGCGCTCCGG CATCGAGCTC GACTGCCGGA TCGACCCCGC CTTGTCCGCC
CTTGCGGCCG AGCCGGCGGA AACCGTGTTC CACATGTGCG AGGAAGTGCT GCGCAACGTC
GAGCGGCACG CGGGCGCGGC ACGCCTCCTG ATCCGCCTGC AGCGCATGGG AAGCGACGGC
ATCGAACTGG AGATCGCGGA CGACGGCATT GGCTTCGAGC CGAGCGCAGG CGCCGCGGGG
CACTACGGGC TCGTCGGGCT GCGGGAGCAG GCCGAAGCGA TCGGCGCCCA CCTGCGCATC
GACAGCCGCA GCGGCGAAGG CACCCGCGTA TCGCTGCGGT GGAGGCATGC GGGCGCAGCC
TGA
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| Protein sequence | MPKVTATGCE NPQPMNLARR IDPRRSMAAA IGWLLIALTL CLALAANLWL RSFVRATLLE
QHGQRLEAAA EHVSAELDTA LLLRLQAVSV VAAMLSEDVQ RSEGARLKRS LEAVRRGVPD
LIWLAVTDAD GFIVAATDEQ VVGQNVNQHA WISQGLDAAW IEEGRSPQER FLKLTAPVRN
ADGAIIGVVA ANLRWNWVQK MMAEIRASPG EWLLIDRDGI VRHGPSALLG QRWQDAGDPI
TPFDPVVAGL GNDGSDLPMR IRTRRLLDNR PYLIATPPNA REGTLRRLGW QAVVIQPVES
VAAFATAIEW RISIVLSLLG LAAAVAGIVM ARRLTRRVSV IAHSADAVLA GSATRIEVPQ
GADEAARLGS ALDRLLDTLQ RERDELRRLN AELDERVRQR TEEINRLAQE SRDAAVVRER
LRLARGLHDT LAHSMMAMLT EIRVLKHLAS NRPDALPNEL VRAERAARDG LDEARRAIDQ
LRSNPVRDIG LGAALAELAK SLGERSGIEL DCRIDPALSA LAAEPAETVF HMCEEVLRNV
ERHAGAARLL IRLQRMGSDG IELEIADDGI GFEPSAGAAG HYGLVGLREQ AEAIGAHLRI
DSRSGEGTRV SLRWRHAGAA
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