| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5556 |
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| Symbol | |
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| ID | 7975413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 258415 |
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| End bp | 259182 |
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| Gene Length | 768 bp |
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| Protein Length | 255 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644796140 |
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| Product | two component transcriptional regulator, LuxR family |
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| Protein accession | YP_002947414 |
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| Protein GI | 239820229 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.853701 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCACCA TCGCCGAACC GTCATCCTCT TCTTCGCAGG CCGCGCCGAA AATCCGCGTG
CTGATTGCCG ACGATCAGGC ACTGATCCGT CGCGGCATGG CCATGCTGCT GGACGCCGCG
CCGGACATCG AGGTCCTCGG CCAGGCGGCC GACGGCGTGG AAGCCGTGGA GCTGGCCCGC
CGCCTGCTGC CCGACGTGGT GCTGATGGAT CTGCACATGC CGCGCAAGGG CGGCGTGCTC
GCGACGCGCG AGATCTCGGC CGCCTTGCCG CACACGCGCG TGATGGTGCT GACCACCTTC
GACCGCGACG ACCTGGTCTT CGACGCGGTG CGTGCCGGCG CACAGGCCTA CCTGCTCAAG
GACGCTTCGG AAGAAGAGGT GCTGGACACC GTGCGGGCCG TGCATCGCGG CGAGTCGCGC
CTCACGCCGC AGATCGCGCG CAAGGTGATG GACCAGTTCC GGCTGTTGGC CGATCGCGTC
GCGCAAGAGC CGCCCTCCCC GCCGGCGCCG GATCCCCGCG CCGCGGCGCA GGCCGCCGCG
CCCGGCGAGC CATCGCCGTC CGATTCGATG ATGACGATGG CGACCAAACC GCTGACCGAG
CGCGAGGCCG CCGTGCTCGA ACTGATCGCC AAGGGCTATG GCAACCGCCA GATCGCCACG
GCGCTCAACC TGGCCGAGGG AACGGCAAAG AACCACGTGA GCCGGATCAT GCAGAAGCTT
CACGCGAACA CGCGCACCGA ACTGGCGGTG CTGGTGTTGA AGAAGTAA
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| Protein sequence | MSTIAEPSSS SSQAAPKIRV LIADDQALIR RGMAMLLDAA PDIEVLGQAA DGVEAVELAR
RLLPDVVLMD LHMPRKGGVL ATREISAALP HTRVMVLTTF DRDDLVFDAV RAGAQAYLLK
DASEEEVLDT VRAVHRGESR LTPQIARKVM DQFRLLADRV AQEPPSPPAP DPRAAAQAAA
PGEPSPSDSM MTMATKPLTE REAAVLELIA KGYGNRQIAT ALNLAEGTAK NHVSRIMQKL
HANTRTELAV LVLKK
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