| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5552 |
|---|
| Symbol | |
|---|
| ID | 7975409 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | + |
|---|
| Start bp | 256096 |
|---|
| End bp | 257172 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644796137 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_002947411 |
|---|
| Protein GI | 239820226 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.730756 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTCG ACGCCTTCTC CTTGCGCGCC ATCCCGCTCA AGAACCGTGC CGTGATGTCG
CCGCTCACCC GCAGCCGCGC GGCCGAGAAC AACACGCCCA ACAGCCTGAT GGCCACCTAC
TACGCCCAGC GCGCGGGCGC CGGGCTCATC ATCACGGAAG GCACCTCGCC TTCGCCCAAC
GGCCTGGGCT ACGCCCGGAT TCCCGGCCTG TTCAATGATG CCCAGGTGCA AGGCTGGAAG
CTCGTGACCG ACGCAGTGCA TGCCAAGGGC GGCAGGATCG TCGTGCAGCT CATGCACACC
GGCCGCGTGG CCCACTCGGA CAACCTGCCG GCCGGTGCCG AGGTGCTGAG CTCGTCGTCG
GAGACATGCC CCGGCCAGAT GTGGACGGAT ACGCAAGGCA ACCAGCCTCA CACGCCGCCG
CGCGCCATGA CCGAGGCCGA CATCCAGGTG GCGATCGGCG AATACGCCAC GGCTGCGCGC
CTTGCCATCG AGGCCGGCTT CGACGGCATC GAACTGCATG CCGCCAATGG CTACTTTCTC
GAGCAGTTCC TGAACGCCAA CGTCAACCGC CGCACCGACG GCTACGGCGG CACGGCCGAA
GGGCGCAACC GGCTGGTGCT CGAGGTCGCG CGTGCGGCCG TGAAGGAAAT CGGCGCGGAG
CGCGTGGGCA TCCGCTTGTC GCCGCACGGC GTGCTCAATG GCACCGGCGC GTTCGAAGGC
GTGGACGAAC AGTACCTGGC GCTGGTGAAG CAGCTCTCCG CGCTCGGCCT CATGTACGTC
CACGTGCTCG ACCATTCGGC CCTGGGCACC CCGCCCGTCC CGGCCAAGCT GAAGACCGAC
CTCAGGGCCG CGTTCGATGG CCCCTTCATC CTTGCCGGCG GACTCGACAA GGCCAGCGCA
CTGCAGGCCC TGAGCGAAGG CCGCGCAGAC CTGACGGCCA TGGGCAGGGC CTTCATCGCC
AACCCCGACC TGGTCGACCG CATGCGCCAG GACGCGCCGC TGAATGCGCC TGCGCCGGAG
ACGTTCTACA CGCCCGGCGC CAAGGGCTAC ACGGACTATC CGACGCTCGC GGGCTAG
|
|---|
| Protein sequence | MLFDAFSLRA IPLKNRAVMS PLTRSRAAEN NTPNSLMATY YAQRAGAGLI ITEGTSPSPN
GLGYARIPGL FNDAQVQGWK LVTDAVHAKG GRIVVQLMHT GRVAHSDNLP AGAEVLSSSS
ETCPGQMWTD TQGNQPHTPP RAMTEADIQV AIGEYATAAR LAIEAGFDGI ELHAANGYFL
EQFLNANVNR RTDGYGGTAE GRNRLVLEVA RAAVKEIGAE RVGIRLSPHG VLNGTGAFEG
VDEQYLALVK QLSALGLMYV HVLDHSALGT PPVPAKLKTD LRAAFDGPFI LAGGLDKASA
LQALSEGRAD LTAMGRAFIA NPDLVDRMRQ DAPLNAPAPE TFYTPGAKGY TDYPTLAG
|
|---|
| |