| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5549 |
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| Symbol | |
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| ID | 7975406 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 253602 |
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| End bp | 254489 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796134 |
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| Product | transcriptional regulator, AraC family |
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| Protein accession | YP_002947408 |
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| Protein GI | 239820223 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTACACGC CGCCTCCCGC CGATTTTCCT GTCTTCGACA GCTCCGACTT CAGCGGCGAA
GCAGGCGCAT TCCATTTCGA CCTGGTGCGG CTCGAAGACC GCCCGGACAT CCCACGCGGC
TTTCCGCACC GCCACAACTA CTACCACCTG CTGTGGATGA GCGAGGCCGC GGGCACGCAC
CTGCTCGACT TCGAGACCTT CGAGGCGCGC GCCAACACCG TGTTCTTCGT CTCGCCCGGC
CAATTGCACG CCTGGGCCTC GACCGTGCAG CCCAAGGGCT TCGTCATCAA CTTCAGCACC
GAGTTCTTCG TGCAGATGTT CCCGCGCTCG GACGACATCG CGAAGTACCC GTTCTTCCAC
ATCGCGTCGG ACGCTCCCGT GCTCTACCTT GACCAAGCGC AGCACGACGA GCTGCTGCCG
CTGCTGCTCG AGATGGAAAG CGAGATGCTC GGGCGGGCGG AGGCGCGGCT GGACATCGTG
CGCTCCTACC TGCTGGTGCT GCTGACGCGG TTGCGGCGGC TCTATCCGGC GCGTGCGGCC
GACGGCGCCT CGCCGCAAAG CTACTCGCTG ACCAAGCGCT TCAAGCTCCT GATCGACCAG
CACTACCTCG ACTTCGGCCC GCTGCGCGAC TACGCGCAGC GGCTGCATGT CACGGAGCGC
CAGCTCAACG ACGCCGTCAA GCGCACGCTC GGCAAGACCG CGGGCGAGCT GGTTCATGAG
CGCCTGGTGC TCGAGGCCAA GCGGCTGCTG TGCAACACCG ACATGGGCGT GGCCGAGATC
GCATTCCATC TTCACTTCGA AGACCACGCC TACTTCAGCC GCTTCTTCAA GAAGCGCACG
CAGCTGACAC CCGGCGAGTT CAAGAAGCGC TACGGCACGG CCCTCTAG
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| Protein sequence | MYTPPPADFP VFDSSDFSGE AGAFHFDLVR LEDRPDIPRG FPHRHNYYHL LWMSEAAGTH
LLDFETFEAR ANTVFFVSPG QLHAWASTVQ PKGFVINFST EFFVQMFPRS DDIAKYPFFH
IASDAPVLYL DQAQHDELLP LLLEMESEML GRAEARLDIV RSYLLVLLTR LRRLYPARAA
DGASPQSYSL TKRFKLLIDQ HYLDFGPLRD YAQRLHVTER QLNDAVKRTL GKTAGELVHE
RLVLEAKRLL CNTDMGVAEI AFHLHFEDHA YFSRFFKKRT QLTPGEFKKR YGTAL
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