Gene Vapar_5547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5547 
Symbol 
ID7975404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp250769 
End bp251746 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content72% 
IMG OID644796132 
Producthypothetical protein 
Protein accessionYP_002947406 
Protein GI239820221 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAAC TGCTGCGGGC TTCGGCCCTG GCGGCACTGG GCGCCTGCGC GCTCGTGCAG 
GCCCATGCGC AAGGCCCCGC CGACTTTCCG ACACGCCCGA TCCGGATCGT GGTGCCCTTT
GCCGCCGGCG GCGCCACCGA CGTGATCGCC CGCGTGGTGG GACAGAAGAT GTCGGACCAG
CTCGGCCAGC CCGTGGTGGT CGACAACAAG GCCGGGGCCA ACGGGAACAT CGGCGCCGTG
GCCGTGGCCC GCGCTGCGCC CGACGGCTAC ACGATCCTGA TGGCGACCTC GAGCCACGCG
ATCAACGCGA CGCTCTACCG CAAGCTCGAC TACAGCCTGA CCAAGGACTT TGCGGCGCTG
TCGAACCTGG CCTCGGTGCC GCTGGTGCTG GTGGTGAACC CGGGCGTGCC GGCACGCAGC
GCGGCCGAGT TCGCGGCCTA CGCGAAAAGG CAGGGCGACA GGCTCAACTT CGCTTCGGGC
GGCACCGGCA CCGCGGCGCA CCTGGCGGGC GAGCAGTTCA ACACCCTGGT GGGCACGCGC
ATGCTGCATG TGCCCTACAA GGGCGGCGCG CTGGCCCAGA CCGACCTCAT CGGCGGCCAG
GTGCAGGCGA TGTTCGCCAA CCTGCCCGAG GTGCTGTCGC AGGTGCAGGC CGGCAAGCTG
CGGCCGCTGG CGCTGACCGG CAAGGCCCGC CGCGCCAGCC TGCCCGAGGT GCCGACCTTC
GCCGAAGCCG GCTATCCGCA GATGGAGGCG CGCTCGTGGT TCGGCCTCTT CGCGCCGGCC
GGCACCCCGG CGCCGGTGGT GGCCCGGCTG TCTTCGTCGA TCGCGCAGGC GGTGGCCGAC
CCGGCCGTGC AGGCGCGCCT CAAGGAACTC GGCGCCGACG CCATCGGCGA CACGCACGAA
GCCTTCCAGC CCTTCGTCGC ACAGGAAGTG AAGCGCTGGG GCGCACTGGT CGAGCGTTCC
GGCGCGACCG TGGACTGA
 
Protein sequence
MNKLLRASAL AALGACALVQ AHAQGPADFP TRPIRIVVPF AAGGATDVIA RVVGQKMSDQ 
LGQPVVVDNK AGANGNIGAV AVARAAPDGY TILMATSSHA INATLYRKLD YSLTKDFAAL
SNLASVPLVL VVNPGVPARS AAEFAAYAKR QGDRLNFASG GTGTAAHLAG EQFNTLVGTR
MLHVPYKGGA LAQTDLIGGQ VQAMFANLPE VLSQVQAGKL RPLALTGKAR RASLPEVPTF
AEAGYPQMEA RSWFGLFAPA GTPAPVVARL SSSIAQAVAD PAVQARLKEL GADAIGDTHE
AFQPFVAQEV KRWGALVERS GATVD