Gene Vapar_5539 details

Gene Information

• Locus tag: Vapar_5539
• ID: 7975396
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012792
• Strand: +
• Start bp: 242808
• End bp: 243521
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 644796124
• Product: regulatory protein GntR HTH
• Protein accession: YP_002947398
• Protein GI: 239820213
• COG category: [K] Transcription
• COG ID: [COG2186] Transcriptional regulators

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGAAC ACTTGCTAGA CGTCAATGGC GGCACACTGC CCGACCAGAT CTACGCCCGG 
ATGGTCGAAG CCATCCTGCG CGGGGACTAC GTCGACTCGA AAAAGCTGCC GACGGAAAGC 
GAACTGGCCT CGCAATTCGG GGTCTCGCGG CCGACCGTCC GGGAGGCACT GTCGAGGCTG 
CGGTCGGACG GGATCATCGA GTCCCGCCGC GGCTCCGGCA GCCAGGTCGT GCGGGCCCCC 
GGGACACCGG CATCGAGCAT GCCCCCCATC AGGAACTATT CGGACATCGA GCGGTATTAC 
GCCTACCGCA CAGTTGTTGA ATCGGGGGCG GCGGCCGCCG CGGCGGAGTT CCGCACTGCC 
GACGACCTGA CGACGATCAG AGCCTGCCTG GAAGCGCAGA CCCTGGCCAT GGAGGGTGGA 
AACAAAGGCA TCGAAGACGA CGTCCGCTTC CACAGGGCGA TCGCGAGGGC CTCGCACAAC 
CAGTTCTTCG TGGCCGCCGT CGAAACGAGT GTCGCGCCCA TCAGGCAATT CATGGAACTG 
GCGCGCAGCG TGCGATCGAA GATGACCGTC GAGCGTGTCC GGCTGGTCCA GATGGAGCAC 
CAGCAGATCC TCGACGCCAT CGAGAAACGA TCCCCGGCCG ACGCCGCCGA GGCAACACGG 
CTCCATATCC TCAACGCCAA GCGACGGATC TTCGACGCAG CGAAATTGCG GTAG 

 

Protein sequence

MAEHLLDVNG GTLPDQIYAR MVEAILRGDY VDSKKLPTES ELASQFGVSR PTVREALSRL 
RSDGIIESRR GSGSQVVRAP GTPASSMPPI RNYSDIERYY AYRTVVESGA AAAAAEFRTA 
DDLTTIRACL EAQTLAMEGG NKGIEDDVRF HRAIARASHN QFFVAAVETS VAPIRQFMEL 
ARSVRSKMTV ERVRLVQMEH QQILDAIEKR SPADAAEATR LHILNAKRRI FDAAKLR