| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5537 |
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| Symbol | |
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| ID | 7975394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 240224 |
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| End bp | 241324 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644796122 |
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| Product | ABC transporter related |
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| Protein accession | YP_002947396 |
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| Protein GI | 239820211 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTTCAG ACTTTTCCGA GTTGCGCCTC GATGGCGTCA CGCGCCGCTT TGCCGCGGGC
AAGGGCGTGC AGAGCTTCAC TGCGCTCAAT GCCTTGACCA TGACGGTCAA GCGCGGCGAG
TTCATCGCGC TGCTTGGACC CTCGGGCTGC GGCAAGTCGA CGGCCCTCAA TTGCCTGGCC
GGGCTGCTGC CCTTGACGGA TGGAGGCATC TGGCTCGACG ACACCCGCAT CGATGTACTG
CCGCCTGAAA AACGGGGCTT TGGCATGGTG TTCCAGAACT ATGCGCTCTT TCCGCACATG
AGCGTGGCGC GCAATGTCGC GTTCGGGCTG GCGATGCGCG GCGTGCCATC CGCCGAGTCG
GCGCAGCGCG TGAAGCGGGC GCTGGACCTT GTGCAGCTGA ACTCGCAGGC GCACAAGCTG
CCCGGCCAGT TGTCCGGCGG ACAGCAGCAG CGGGTCGCGA TCGCCCGGGC GATCGTCATC
GAGCCGCCGC TGGTGTTGAT GGACGAGCCC TTGTCGAATC TCGACGCCAA GCTGCGGCTG
GAGATGCGCG CCGAGATCCG GCGCATTCAC CGCGAACTGG GACGATCGAC GATCTACGTC
ACCCACGACC AGGACGAGGC GCTGTCGCTG GCCGATCGCG TCGTCGTCAT GAAGGACGGC
GTGGCACAGC AGATTGCCGA GCCGCAGCGC ATCTACGCGG AGCCGGCCAA CCTGGACGTG
GCCCGCTTCA TGGGCTATCG CAACCTGGTG GAGCTGGACG TGCGCTCGGA GGGCGGCGCG
TCGGTGCAGC TCGCCGGCAG CGGCCTGGCG CTCAACGCGC GGGCGATGCA GCCACTCGCC
AGCGGCAAGG CGATGCTCGC GATCCGGCCC GAGGAATTCG ACGTCGTCTC TTCACCGGTG
GACAACAGCT TTGCCGCCCG GGTGCTCAAT GTCGAATACT GCGGCCACGA CAACATCGTC
GACGTCGAGG TGGCCGGCGG GCTCAAGCTG ATCGTGCGCA CGACGGCGCG CCTGCGGGTC
GGCGATCCGG TCATGCTGGC CATTGCGCCG GACAAGGCGC TGGCCTATCC CGTCGATGCA
GCCGCGGGCA TGGTGCCATG A
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| Protein sequence | MTSDFSELRL DGVTRRFAAG KGVQSFTALN ALTMTVKRGE FIALLGPSGC GKSTALNCLA
GLLPLTDGGI WLDDTRIDVL PPEKRGFGMV FQNYALFPHM SVARNVAFGL AMRGVPSAES
AQRVKRALDL VQLNSQAHKL PGQLSGGQQQ RVAIARAIVI EPPLVLMDEP LSNLDAKLRL
EMRAEIRRIH RELGRSTIYV THDQDEALSL ADRVVVMKDG VAQQIAEPQR IYAEPANLDV
ARFMGYRNLV ELDVRSEGGA SVQLAGSGLA LNARAMQPLA SGKAMLAIRP EEFDVVSSPV
DNSFAARVLN VEYCGHDNIV DVEVAGGLKL IVRTTARLRV GDPVMLAIAP DKALAYPVDA
AAGMVP
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