| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5536 |
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| Symbol | |
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| ID | 7975393 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 239364 |
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| End bp | 240227 |
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| Gene Length | 864 bp |
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| Protein Length | 287 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796121 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002947395 |
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| Protein GI | 239820210 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGCG CCAGCCCGTC TTCGTTCGAC CGGTCCCTGC TGCTGCTGGT GCCGGCGACG
CTCTTCATGG TGGTGCTGTT CGTCTATCCG TTCCTCTACG GCTTGCAGCT GTCGTTCCAT
CCGATGGAAG GCAACTGGCT GGCGAACTAC ACGCAGTTCT TCACCACCGG CAACCTGCGC
GACACGGTGT GGACCACGCT CAAGCTGGCC ATTCCCGCCA CCGTGATCAA CGTCGGCGCG
GCGCTGCCGA TCGCCTATCA GATGCGCCGC AGCAGCCGCT TCCAGAAACT GATCACCACG
CTGCTGGTCA TTCCGTTGAC GCTGGGCACC GTCCTGATCG CGGAGGGCAT GCTCGGCTAC
TTCGGCCCCA AGGGCTGGCT GTCGCAGTCG CTCCAGTGGC TGCACATCTA CGAAGGCCCG
ATCCGGCTGA CGCACAACTA CTGGGGCGTC CTGATCTCGC TCGTCATCTC GGGTTTCCCG
TTCGCGTTCC TGCTCACGCT GTCGTACATC ACCGGCATCG ACCCCAACCT GCCACGCGCT
GCCTCGACCC TGGGCGCAAC GCCGTGGAAC CAGTTCCGGC ATATCTATCT GCCGCTGCTG
GTCCCGGGGC TGGCGATGGC CTTCGCGCTG TCGTTCGTGC AGGCCTTCTC GGTGTTTCCG
TCGGCGGTCC TGCTCGGGTC GCCGGCCGGT GCCACCCGAG TGATCTCGAT CGCGGCGTAC
GAGGCCGCCT TCGAGCGCTA CGACTATTCC ATGGCTTCGG CCGTCGCGAT GCTGATGGGC
GTGGTGCAGC TGTTCGTCGT TGCCGCGGTC CTGGGCGCGC GCGGGATGTT CTATCGGGGC
CCCGTCTCCG GCGGCAAAGG TTGA
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| Protein sequence | MSSASPSSFD RSLLLLVPAT LFMVVLFVYP FLYGLQLSFH PMEGNWLANY TQFFTTGNLR
DTVWTTLKLA IPATVINVGA ALPIAYQMRR SSRFQKLITT LLVIPLTLGT VLIAEGMLGY
FGPKGWLSQS LQWLHIYEGP IRLTHNYWGV LISLVISGFP FAFLLTLSYI TGIDPNLPRA
ASTLGATPWN QFRHIYLPLL VPGLAMAFAL SFVQAFSVFP SAVLLGSPAG ATRVISIAAY
EAAFERYDYS MASAVAMLMG VVQLFVVAAV LGARGMFYRG PVSGGKG
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