Gene Vapar_5531 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5531 
Symbol 
ID7975388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp234461 
End bp235426 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content67% 
IMG OID644796116 
Producthypothetical protein 
Protein accessionYP_002947390 
Protein GI239820205 
COG category[S] Function unknown 
COG ID[COG3181] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGCC GCTTCTTCGC CGCCCTCGTG TTCGGCCTCA TCGCTGCTGC GAACTGGCCT 
GTCGCCGCAC AGACCTATCC AGCCCACCCG GTGAAGCTGG TCATCCCGGT TCCGCCCGGC
GGCAGCGCGG ACGTGGTCGG GCGCCTGCTT GCCAATGCGG CGTCGGCGGA GCTGGGCCAG
CCCGTCATCG TCGACAACCG TGCCGGAGCC GCCGGCAGCG TGGGAACGGC GTCGGCGCTG
AAGGCGCCGG CCGACGGCTA CACGCTGGTC CAGTGCAGCA TCGGCAGCTG CGCCATCAAT
CCGAGCCTGT ACAAGAACGT CGGCTACGAC CTGTTCAAGG ACATGGCCCC GGTGATCCTG
CTGGGCGCAT CGATCAATGT GCTCACCGTC AACAACGAGG CGGGCATCCG CAGCGTGAAG
GACCTGGTCG ACCAGGCCAG GCGCCAGCCC ATGGCCTACG CGTCTTCGGG CGTGGGCGCG
TCCAACCACC TCGCCGCCGA GTTGCTCAAG AAGATGGCGG GCGTCGAGCT GACGCATGTG
CCGTACAAGG GATCGGGGCC TGCCATCACC GACCTCATCG GCGGCCAGGT CCCGGTGTTC
TTCGACAACG AGCCTTCCAT CCTGCCCTTC ATCAAGCAGG GCAAGGTGCG TGCGCTGGCG
GTGACGGGCA AGACGCGCTC GGCCAATCTG CCGGACGTCC CGACGATGGA AGAACTGGGT
TTTGCCGGCT TCGTCATCGA GCCGTGGTAC GCCTTCGCGG CCCCGGCGGG CACGCCCGAG
CCGGCGATCC GGCGGCTCAA TACCGCGTTC AACAACGCGC TGAATCAACC GGCGGTGCGC
GACAGGATGG TCGCCATGGG CATTACCCCG GCGGGCGGCT CGCCCGAAGT GCTCGGTCGC
CTGATCCGCA GCGAATACAC ACGCTGGGCG GAGTTGATCC GCGTGCAAGG TATCAAGGGA
GATTGA
 
Protein sequence
MERRFFAALV FGLIAAANWP VAAQTYPAHP VKLVIPVPPG GSADVVGRLL ANAASAELGQ 
PVIVDNRAGA AGSVGTASAL KAPADGYTLV QCSIGSCAIN PSLYKNVGYD LFKDMAPVIL
LGASINVLTV NNEAGIRSVK DLVDQARRQP MAYASSGVGA SNHLAAELLK KMAGVELTHV
PYKGSGPAIT DLIGGQVPVF FDNEPSILPF IKQGKVRALA VTGKTRSANL PDVPTMEELG
FAGFVIEPWY AFAAPAGTPE PAIRRLNTAF NNALNQPAVR DRMVAMGITP AGGSPEVLGR
LIRSEYTRWA ELIRVQGIKG D