| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5528 |
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| Symbol | |
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| ID | 7975385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 231744 |
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| End bp | 233381 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796114 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_002947388 |
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| Protein GI | 239820203 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.283745 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGCCG ACGACTGGTG GAAGTGCGGA ATCGTCTATC AGGTCTATCC GCGTTCGTTC
CAGGACAGCA ACGGCGACGG CATCGGAGAC CTGGATGGAA TCCGCGCGCG GCTGGACCAT
CTGGTCTCGC TCGGTGTCGA TGCCGTCTGG ATCTCGCCGA TATATCCCTC GCCGATGGCC
GACTTCGGCT ACGACATCTC CGACTTTTGC GGCATCGATC CGCGCTTCGG CACGCTGGAA
GGCTTCGATG CGCTGGTGCA GGAGGCGCAC GCGAGAGAGC TCAGGATCAT CCTGGACTTC
GTGCCCAACC ACACCTCGGA CCATCATCCG TGGTTCATGC AGAGCCGCAG CGCGCGCAGC
GATCCGCGGC GCGACTGGTA CATCTGGCGT GACCCGGCGC CGGGCGGCGG GCCGCCCAAC
AACTGGCTCA GCAATTTCGG CGGCCCGGCC TGGACCTTCG ATCCGGCCAC CGGCCAGTAC
TACGCCCATT CGTTCCTGAA GGAGCAGCCC GATCTCAACT GGCGCAACCC CGAAGTGCGG
ACCGCGATGT ACGAGGTGCT GCGCTTCTGG CTTCGGCGTG GCGTCGACGG ATTCCGCGTC
GACGTGCTCT CCCAGATCAT CAAGGACGCG CAGTTCCGCG ACAACCCGCC GAACCCGGAT
TTCATCGAAG GCCAGGACCC CTTCTTTCGC TGGCAGATGC TCTACAACAC CGACCTGCCG
GAGCTGCAGC CGATCGTGGC CGAGATGCGC CGCGTGGTCG ACGAGTTCAG CGACGCACGC
TCGTCGCGCG TGCTGATCGG CGAGCTCTAC CTGCCGCTCG CGCGCCTGGT CGCCTACTAC
GGACTCAACA CCGAAGGTGT GCTCGAAGGC GTGCAGCTGC CCTTCAACTT CCAGCTGATC
GCGACCGAGT GGCAGGCGGC GCGCATCGAC CGCCTGGTGC GCGACTACGA AGCCGCCTTG
CCCGCCGGCG CCCAGCCGAA CTGGGTGCTG GGCAACCACG ACAGGTCGCG CATCGCGAGC
CGCGTCCGGC CGCAGATGGC ACGGCTCGCG GCCATGCTGC TGCTCACGCT GCGCGGCACG
CCGACGCTCT ACTACGGCGA CGAGATCGGC ATGACGGACG TCGCCATTCC CGCCGATGAG
GTGCAGGACC CATTCGAGAA GAACAAGCCC GGCATGGGCC TGGGCCGCGA CCCGGAGCGA
ACACCCATGC AGTGGAGCGC CGCAGCGCAT GCGGGCTTCA CGACCGGTAC CCCGTGGCTG
CGCCTGGCGG CCGACGGGCC CACGCGCAAC GTGGAAGCGC AATCGCAGGA CGCGGGCTCG
ATGCTGGCGC TCTACCGGCG CCTCATCGCG CTGCGCCGCG CGCAGCCTGC GCTGAACCGG
GGCAACTACG AAGCGCTCGA TGCCGAGGGC GAGGTGCTCG CCTATGCGCG CAGCTTCGAA
GGACGGCGGC TGGTGGTGCT GTTGAACTTC GGTGCCACCC CGGCGCCGAT CTCGCCGGCG
TTGATGCCGC GCCAGCCGGT CGTGCTGGCA TCGACCGATC CTGCGCGCGC CGAGTCGATC
GAGGGGCCGC TGGAGCTGGC GCCTTGCGAA GGCGTCGTGC TCGGCGCCCT GAACGGCAAG
GCTCCGGCGA CACGCTGA
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| Protein sequence | MSADDWWKCG IVYQVYPRSF QDSNGDGIGD LDGIRARLDH LVSLGVDAVW ISPIYPSPMA
DFGYDISDFC GIDPRFGTLE GFDALVQEAH ARELRIILDF VPNHTSDHHP WFMQSRSARS
DPRRDWYIWR DPAPGGGPPN NWLSNFGGPA WTFDPATGQY YAHSFLKEQP DLNWRNPEVR
TAMYEVLRFW LRRGVDGFRV DVLSQIIKDA QFRDNPPNPD FIEGQDPFFR WQMLYNTDLP
ELQPIVAEMR RVVDEFSDAR SSRVLIGELY LPLARLVAYY GLNTEGVLEG VQLPFNFQLI
ATEWQAARID RLVRDYEAAL PAGAQPNWVL GNHDRSRIAS RVRPQMARLA AMLLLTLRGT
PTLYYGDEIG MTDVAIPADE VQDPFEKNKP GMGLGRDPER TPMQWSAAAH AGFTTGTPWL
RLAADGPTRN VEAQSQDAGS MLALYRRLIA LRRAQPALNR GNYEALDAEG EVLAYARSFE
GRRLVVLLNF GATPAPISPA LMPRQPVVLA STDPARAESI EGPLELAPCE GVVLGALNGK
APATR
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