| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5526 |
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| Symbol | |
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| ID | 7975383 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 227691 |
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| End bp | 229454 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644796112 |
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| Product | ABC transporter domain protein |
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| Protein accession | YP_002947386 |
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| Protein GI | 239820201 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.776813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGCGC GGACAGAGAA CCGTGTCGAG CCGGCTGCAA GGACCGGTTT CTTCCGTCAG
GTCAGCGAGC TGCTCGGCGC CCTGCGCGTA TCGCCGGTCG CAAAAACGCT GGTCGCGCTG
ATGGGTGCGA TCGTCGTGGT GGTCGCGCTC ACCGCGTATG GGCAGATCGA GCTCAACAGC
TGGAACAAGC CGTTCTACGA TGCGATCTCG CGCCGCGACC TCGGCGAATT CGTCGTGCAG
GTCGGCGTCT TCGCGATCAT TGCGGGGGCG CTGCTGGTCC TGAACGTGGC GCAGCGGTGG
CTCGGCGAAA CCCTGCAGCT GAAGCTGCGC GAGGCCGTGG TCAATGACCT CGTCGGGCTG
TGGCTGCAGC CGCGCCGGGC GTTCTGGCTG CAGGCCAGCG GCCCGATGGG GGCCCACCCC
GACCAGCGCA TGCACGACGA CACGCTGAAG CTGTGCGATC TGTCGGTCAC CCTTGGCGTG
GGCCTGTTGC AGGCAGCGAT GCTGTTCGGC AGCTTTGCGA GCGTGCTGTG GGTCCTCTCC
AAGGACTTCA GCCTCTTCTT CAATGGCAAG GACCATGTGC TGCCGGGCTT CATGCTGTGG
GCGGCCATTG CCTATGCGAT CGCCGGCTCG CTGGTCACCT ACTGGGTCGG CAGCGGCCTG
ATCTCGCGCA ATGCCGAGCG CTACGCGCGC GAGGGCGAAT TGCGCTTCTC GCTGACGCGC
ATCAACGAGC ATCTCGACGG CATCTCGCTG GCGGGTGGCG AGGCCGACGA GAAGCGCCGC
GTCGCCATGC ATTTCGGCGA CGTCCTTCGC GCCACCTCGC GCGTGGTGCT CGGGCTGACC
AACCTGACCT GGGTCACGGC GGGCTTCGGC TGGATCACCA TCATCGCGCC GACGCTGGTG
GCCGCGCCCC TGTACTTCTC GGGGAAAGTG TCGTTCGGCG GCCTGATGAT GGCCGCCGCG
GCCTTCACGC AGGCGCAGTC GTCGCTGCGC TGGTTCGTCG ACAACTTCAG CATCATTGCC
GACTGGCGCG CCACGCTGCT GCGCGTTGCC GACCTGCGCC GCATGCTGGC GTCCGACCTG
GAGGCACGCG CAGGCGGCAG CCGCATCGCC TACGAAGAGG GCGAAGCCGG GGTGCTCGCG
ATCGAAGCGC TCGAAGTCCG CTCCTGGACC GGCCACGATC GGCTGGACGC TCCGGGTCTT
GTCTTGCATC GCGGCCAACG CGTCCTGATC CTCGGCACGC CGGGCACCGA GAAGACCTTG
CTGTTCCGGG CGCTCGCGGG CCTTTGGCCC TGGGGCTCCG GCACCGTGCG CCGGCCCGCC
GGCGAGACCA TCCACTACAT GCCGCGGGGC ACGCCCTACA TTCCGCGCGG CACGCTGGCC
GAGGTGCTGT CGTATGCGAT GGAGCCGTCG AGCTACCCGA GGGAAGCCAT GGTGGCCGCA
CTGGCGAGCG TGGGCCTGCA GCGCCTGGAA CCCTTGCTGA ACAAGACGGG CCGCTGGGAG
AGCGAGCTCA GCATGGACGA GCAGCTGCGG CTGGGCTTTG CCCGCGTGGT GCTGCAGGCG
CCGCCCTGGC TGGTGATGGA CGAGGCCTTC GGCGCGTTCG ACGACGACAC GCGCGAACTC
ATCATCGACC TGCTGGGCAA GCTCGAGCAC ACGGGCATTG TCCACATCGG CTCGGCCGGA
GAAGCGCGCG ACCGGCTGTT CACGCAGGTG GTGCACCTGG TCAAGGCGCC GGCGAACACC
GTGCGCGAGG AGCAGCGGCC ATGA
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| Protein sequence | MSARTENRVE PAARTGFFRQ VSELLGALRV SPVAKTLVAL MGAIVVVVAL TAYGQIELNS
WNKPFYDAIS RRDLGEFVVQ VGVFAIIAGA LLVLNVAQRW LGETLQLKLR EAVVNDLVGL
WLQPRRAFWL QASGPMGAHP DQRMHDDTLK LCDLSVTLGV GLLQAAMLFG SFASVLWVLS
KDFSLFFNGK DHVLPGFMLW AAIAYAIAGS LVTYWVGSGL ISRNAERYAR EGELRFSLTR
INEHLDGISL AGGEADEKRR VAMHFGDVLR ATSRVVLGLT NLTWVTAGFG WITIIAPTLV
AAPLYFSGKV SFGGLMMAAA AFTQAQSSLR WFVDNFSIIA DWRATLLRVA DLRRMLASDL
EARAGGSRIA YEEGEAGVLA IEALEVRSWT GHDRLDAPGL VLHRGQRVLI LGTPGTEKTL
LFRALAGLWP WGSGTVRRPA GETIHYMPRG TPYIPRGTLA EVLSYAMEPS SYPREAMVAA
LASVGLQRLE PLLNKTGRWE SELSMDEQLR LGFARVVLQA PPWLVMDEAF GAFDDDTREL
IIDLLGKLEH TGIVHIGSAG EARDRLFTQV VHLVKAPANT VREEQRP
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