| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5523 |
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| Symbol | |
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| ID | 7975380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 222729 |
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| End bp | 224873 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796109 |
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| Product | glycoside hydrolase family 3 domain protein |
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| Protein accession | YP_002947383 |
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| Protein GI | 239820198 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1472] Beta-glucosidase-related glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.131263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGCA TCGACACACT CATGGCCCGG ATGACGCTGG CCGAAAAGCT GGGTCAACTG
ACGATGACCG CCTCCAGCTA CACGGTCACC GGACCGGTGC TCGCGGGGGA CTCCACGCAG
TCGATCATCG ACGGCAGCGT CGGCAATCTG CTGAACATGG TCGGCGCCGG CCCCACGCAC
GAGATGCAGC GGCTGGCCAT CGAGAAGTCG CGGCTTGGCA TTCCGCTCTT GATCGGCCTG
GACATCATCC ACGGCCATCG CACGCTCTTT CCGATTCCGC TCGCGGAGGC CGGCAGCTTC
GACGAAGACC TCTGGGAGCG CACCGCGCGC GAGGCCGCGC GCGAAGGCGC GGCCGAGGGC
CTGGCAATGA CCTTCGCGCC GATGCTCGAC GTATCGCGCG ATCCGCGCTG GGGCCGCACC
GCGGAAGGCC CCGGCGAAGA CCCCTGGCTG AACGCGCGCA TCGCAGAGGC CAAGGTGCGC
GGTTTCCAGG GCGCCGACCT GTCGTCGGCC GAATCGCTGG CCGCCTGCGC GAAGCATTTC
GTCGCCTACG GCGCAGTCAC CGCGGGCCGG GAGTACGCCG CGGTGGACAT CTCCGAGCGC
ACCCTGCGCG AGGTGCATCT GCCGGGCTTC GAAGCAGCGG TGCGCGCCGG CGTCGCAACG
CTGATGCCCG CGTTCACCGA TCTCAACGGC GTGCCGATGA CAGCGCACAT CCCCTTGCTG
CGCGACTGGC TGCGCGGCGA GATGGGCTGG GACGGCGTCA TCGTCAGCGA CTACAACGCG
ATCGCGGAGC TGATCAAGCA CGGCGTCGCG GCCGATCTCG TCGATGCCGC GGTACTGGCG
CTGAAGGCCG GCGTCGACAT CGACATGATG GCCGACGCCT ATCGCAAGGG CCTGCCGATC
GCGCTCGAAC AGGGCCGGGT GACGATCGAC GAGATCGACG CAAGCGTGCG CCGCGTGCTG
CGGCTCAAGG AGCAGCTCGG CCTGTTCGAC GACCCCTACC GCCGCGGCGC AACGCCGGAA
CCCGCGGCAG CCGTTGCCGA ACGGCACACG GTGGCGCGCG ACGCCGCGTG CAAGGCCATC
GTCCTGCTGA AGAACGAGCG GGACACGCTG CCCTTGCCTG TGGCACCGAA GGCACTGTGT
GTCATCGGCC CGCTGGCCGA TGCAAGCACC GAGATGAAAG GCCCGTGGTG GGGCGCCGGC
GAACACGAGC CGGCCGTCAG CGTGCTGGCC GGCCTGCGCG CCGCGCTGCC GCAGACCGAC
ATGCGCCATG CGCCCGGCGT CGCCATCGAG GGCGGCGACG ACAGCGGCAT CGAAGCCGCC
ACCCTGATGT GCGACGGCGC CGATGCGGTC GTGCTGTGCC TGGGCGAGCG CGCCACCATG
AGCGGCGAGG CGGCGAGCCG TGCCACGCCC GCGCTTCCGG GCCGGCAACA GGCGCTGGCC
GAAGCGGTGA CGGCGCGCGC CCGCGCGCTC GGCATCCCGG TCGTCGCCAT CTTGTTCTCG
GGCCGCCCGC TCGTCGTGCC CTGGCTGGCT GAAAACGCCG ATGCGCTGCT CGCTGCGTGG
TTCCTCGGCG TCGAGGCCGG CCATGCGATT GCCGACGTGC TCACGGGCCG GGTGTCGCCC
AGCGGCCGCA CGCCGATGAG CTGGCCGCGC GTTCTTGGGC AGGTGCCGAT CCATTTCGGC
CAGCGTCCCA CCGGCCGGCC GATGAATCCC GCCGACCACT TCACGAGCAA GTACCTGGAC
GTGGCCAACA CGCCGCTGTA TGACTTCGGC CATGGCCTGA CCTATGGCCG GTTCGACTAT
GGCGAGCTCC AGGTCGAGCC GCGGCGCGTG CGCGAGGGCG ACACGCTCAA GATCAACGTC
AGCCTGCGCA ACGTCGGCGC GCGCGAGGCC GAAGAGACGG TCTTCCTGTT CGTTCGCCAC
AAGCTGAGCC GCGTCACCCG TCCGCTGCTG GAGCTCAAGG GCTATGCAAA GCTGCGCTTG
AAGCCGGGCG ACGTTGGCTC GATGAATCTG GCGTTGCCGG CGGCCGCGTT GCGCTACCTC
GGGCCGGACC TGCAGCCCGT GTTCGAGCCG GGCGAAGTCG AGGTCCTCGT CGGGCCGAGT
GCCGAGCCAT CAGGCTTGCT GCGACAGACC GTCGAGTTGT ACTGA
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| Protein sequence | MSRIDTLMAR MTLAEKLGQL TMTASSYTVT GPVLAGDSTQ SIIDGSVGNL LNMVGAGPTH
EMQRLAIEKS RLGIPLLIGL DIIHGHRTLF PIPLAEAGSF DEDLWERTAR EAAREGAAEG
LAMTFAPMLD VSRDPRWGRT AEGPGEDPWL NARIAEAKVR GFQGADLSSA ESLAACAKHF
VAYGAVTAGR EYAAVDISER TLREVHLPGF EAAVRAGVAT LMPAFTDLNG VPMTAHIPLL
RDWLRGEMGW DGVIVSDYNA IAELIKHGVA ADLVDAAVLA LKAGVDIDMM ADAYRKGLPI
ALEQGRVTID EIDASVRRVL RLKEQLGLFD DPYRRGATPE PAAAVAERHT VARDAACKAI
VLLKNERDTL PLPVAPKALC VIGPLADAST EMKGPWWGAG EHEPAVSVLA GLRAALPQTD
MRHAPGVAIE GGDDSGIEAA TLMCDGADAV VLCLGERATM SGEAASRATP ALPGRQQALA
EAVTARARAL GIPVVAILFS GRPLVVPWLA ENADALLAAW FLGVEAGHAI ADVLTGRVSP
SGRTPMSWPR VLGQVPIHFG QRPTGRPMNP ADHFTSKYLD VANTPLYDFG HGLTYGRFDY
GELQVEPRRV REGDTLKINV SLRNVGAREA EETVFLFVRH KLSRVTRPLL ELKGYAKLRL
KPGDVGSMNL ALPAAALRYL GPDLQPVFEP GEVEVLVGPS AEPSGLLRQT VELY
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