Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5516 |
Symbol | |
ID | 7975373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 217974 |
End bp | 218789 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644796102 |
Product | ABC transporter related |
Protein accession | YP_002947376 |
Protein GI | 239820191 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1116] ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component |
TIGRFAM ID | [TIGR01184] nitrate transport ATP-binding subunits C and D |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.25838 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACGCCAC AGCAACCGGT ACGCATCAGC TTCGACCACG TGTCGGTCGA TTTTCCGACC GAGCACGGTC CCATGCGCGT GCTCGACGAC GTGTCGTTCG ACATCCGCAA CGGCGAGTTC GTCTCCATCA TCGGCCCGTC GGGCTGCGGC AAGACGACGA TGATGAACAT CGTCGGCGGC TTCGTCCAAC CCACCAGCGG GCAGGTGCTG CTCGACGGCA AGCCGGTGGC CGCGCCGGGG CCCGACCGCG GCGTGATCTT CCAGGAGTAC GGCGTGTTCC CGTGGCTCAC GGTGCGGCAG AACATCGAGT TCGGCCTGAA GCTCTCCGCA AGCCGGGTGC CGACGGCCGA GCGCGAGGAG ATCGTGCAGC GCTACATGCA GCTGATGGGG CTGTCGGACT TTGCGGGGCA TTTTCCCAAG CACCTGTCGG GCGGCATGCG CCAGCGGCTG GCGATTGCGC GGGCCTACGC GGTGCGGCCG GAGTTCCTGC TGATGGACGA GCCCTTCGGC GCGCTCGATG CGCAGACCCG CTCGGCCATG CAGGACCTGC TGCTGCAGGT GCTGCAGAGC GACGGCAAGA CCGTGATGCT GATCACGCAC TCGGTGGAAG AGGCGATCTA CCTGTCGTCG CGCATCGTCG TGGTCACGGC GCGGCCGGCG CGCATCCGCA CCGTGATCGA CATTCCCTTC GGCTACCCGC GCGCGGAAAA CCTGCACGAG GACCCGCGCT TCGCCGAGCT GCGCGCCCAC ATCCGCGAGC TCGTCATGCA GGAATACGCC GCACAGGCCA GGCAGGCCGT GCGCATGTCG GACTAG
|
Protein sequence | MTPQQPVRIS FDHVSVDFPT EHGPMRVLDD VSFDIRNGEF VSIIGPSGCG KTTMMNIVGG FVQPTSGQVL LDGKPVAAPG PDRGVIFQEY GVFPWLTVRQ NIEFGLKLSA SRVPTAEREE IVQRYMQLMG LSDFAGHFPK HLSGGMRQRL AIARAYAVRP EFLLMDEPFG ALDAQTRSAM QDLLLQVLQS DGKTVMLITH SVEEAIYLSS RIVVVTARPA RIRTVIDIPF GYPRAENLHE DPRFAELRAH IRELVMQEYA AQARQAVRMS D
|
| |