| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5506 |
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| Symbol | |
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| ID | 7975363 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | - |
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| Start bp | 209093 |
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| End bp | 209974 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644796093 |
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| Product | SMP-30/Gluconolaconase/LRE domain protein |
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| Protein accession | YP_002947367 |
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| Protein GI | 239820182 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3386] Gluconolactonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGTGC AGATCACCAG AATCGGAACC ACCCGGGACC AGCTGGGCGA GAGCCCTTGC
TGGGATGCCG ACGCGCAGGC GCTGAACTGG ATCGACGCGC TGGGCGGCGC GCTGTGGCGG
CTGCAAGCCG GAGCCGGGCA GGCCGAGCGG CATGAGCTGC CGGCGCCCGT GGGCTCGATT
GCGCCCTGCC GCGGCGCGGC CGTGGTGGTG GCGCTGCGCA ACAGCTTCGC GCGCTACGAC
TTCGCCACCC GCACGCTGGA GCCGCTGGCC CGCATCCCGG TGGATCACCC GAAGGTGCGC
TTCAACGACG GCAAGTGCGA CGCGGCTGGC CATTTCCTGG CCGGCACCAT GCACGTCGAC
CGCCAGCCTG GCGAGGCGGT CATCGGAGGG CTCTACCGGC TGCGCACCGA TCGCCGGGTG
GAGCAGCTGG CCGACGACAT CGGCTTTGCC AACGGACCCT GCTTCAGCCC CGACGGCCGC
GTGCTGTACC TGGCCGACAG CCTGGAACGC ACCATCTGGG CCTGGGACTA CGACCCCGAC
GGCCCGCTGC GCCACAAGCG CATGTTCGCG AGGACGCATG AATTCGATTC GGGCCCCGAT
GGCGCGACGG TCGATGCGGA GGGCTTCGTC TGGACCGTAC TGACCCGCGC CGCCAAGCTC
GCTCGCCTTG CGCCCGACGG CAGGCTGGAG CGGCTGATCG ATCTGCCTGC GAGCTATCCG
ACGAGCATCT GCTTCGGCGG GCCGCACCTG GACTGCATCT ACCTGACCAG CATTTTCCGC
AGCGCGCGCC TGGAAGGGAA CAAGACGCAC GATGGCGGGC TGTTCCGGAT CGAAGGGCTG
CCTGCGCCGG GGCGCCTGCC TGATCGATTT GGAGGCTGCT AG
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| Protein sequence | MTVQITRIGT TRDQLGESPC WDADAQALNW IDALGGALWR LQAGAGQAER HELPAPVGSI
APCRGAAVVV ALRNSFARYD FATRTLEPLA RIPVDHPKVR FNDGKCDAAG HFLAGTMHVD
RQPGEAVIGG LYRLRTDRRV EQLADDIGFA NGPCFSPDGR VLYLADSLER TIWAWDYDPD
GPLRHKRMFA RTHEFDSGPD GATVDAEGFV WTVLTRAAKL ARLAPDGRLE RLIDLPASYP
TSICFGGPHL DCIYLTSIFR SARLEGNKTH DGGLFRIEGL PAPGRLPDRF GGC
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