| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5497 |
|---|
| Symbol | |
|---|
| ID | 7975354 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012792 |
|---|
| Strand | - |
|---|
| Start bp | 199005 |
|---|
| End bp | 201137 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644796084 |
|---|
| Product | CoA-binding domain protein |
|---|
| Protein accession | YP_002947358 |
|---|
| Protein GI | 239820173 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1042] Acyl-CoA synthetase (NDP forming) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.05856 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGCAA CGCAAGTGGG CCACGGCCTC GACGCGCTGT TCAAGCCGCG CTCGATCGCG
ATCTTCGGCG CCTCCGACGA CGTCACCAAG ATCGGTGGCC GGCCGCTGCA GTTCCTGCAG
AAGTACGGCT ATGGGGGCGG CATCTATCCG ATCAACCGCA AGGGCGGCCT GGTGCAGTCG
CTGCAGGCTT ATGCGAGTGT GGCGGAACTG CCCGAGGTGC CCGAGCTCGC AGTGATTGCG
GTGCCGCCCG CGGGCGTGCT CGACGCGGTG CAGGACTGCG CGCAGCGCGG CGTGAAGGCC
GCGGTCATCC TGTCCGCAGG TTTCTCCGAA ATGGGCGAGG AGGGCAGCCG CCTGCAGGCG
CGCATCGGCG AGGTGGCGCG CGCCAGCGGC ATGCGCATCG TCGGCCCCAA CTGCCTGGGC
GCGATCGGCG TGCCGGACAA GAGCATCGCC ACTTTCTCGG TGGCGCTGGA ATCGTCCTTT
CCCGCGGCGG GCTCGGTCGG CATCGTCTCG CAGAGCGGCA ATCTCGGCAG CTTCACCCTG
CGGATGGCCG GCGAACGCGG CCTGGGCGTC AGCCGCATGC TGACCACGGG CAATGAATGC
GACGTGGACA TTGCCGACGC CATCGCCTCG CTGGCGGCCG ACCCCGGCAC CTCGGTGATC
CTGTGCTGCA TGGAAACCTG CCGCGACGGC GCCAAGCTGA TGCAGGCCAT GGCGATGGCC
CGCGAGGCCG GCAAGCCGCT GGTGGTGCTC AAGGTCGGCG TTTCCGAGGC CGGCAGCGCG
GCCGCGGCTT CGCACACCGG CGCGCTGGCC GGCTCGGACG CCGTGTTCGA TGCCGTGCTG
CGCCAGGGCG GCGCACTGCG CGTGCCCAGC ATCGAGCTGC TGCTCGAGGT TGGCCATGCG
CTGTCGGTGG CCGGTCCGGC GCGCGTGCCC GGCGGCCACC GCGTGGCGGT GCTCACGGCC
TCCGGCGGTT TCGGCGTGCT GCTGGCCGAT GCGGCCAGCG CGCAGGGCCT GGCGCTGCCG
AAGCTCGCGG CGCAGACGCA GGCGCGCATC CTCGCGGCCG TGCCCTTTGC CGCGCCGTCC
AATCCCGTGG ACATGACGGC GCAGGTGTCA AGCCGGCCCG AGGTGCTGGC CCAGATGCTC
GACGCCATGG CGCGCGACGA CAGCTGCAAC GCGCTGATCC TGCAGTCGGC CAACGCCTTC
CATGTGCCGC GCCTGCGCGA CGTGTTCCTG GAGGCGCTCG CGCAGGTGCG CAAGGACCAT
CCCGCGCGCC TGATCCTGCT GTGCGCGCGT GCTCCCGAGG ACGTGCGCGC ACGGCTCAAC
GCGATGGGCT TTCCGGTGGT CGAGGGCATC GATGCGGCCT GCGCGACGCT GGCTGCGCTG
CTGCGCTTCG GCGCGCGCGA TGCCGCACGG ATTGCTGCGC CGGCCATCGC GCGCGTGCCG
CTGGCCGCCG AGGCTTTCGC CACCGAGGCC AGCGCCAAGG CGGTGCTGGC CGAGGCGGGA
CTGCCCGTGC CGTGGGAGGC GGTCGCGTGC AGCCTCGACG AGGCGCTCGC CGCTGCGCGC
GACATGGGTT TTCCGCTGGT GCTCAAGATC GTCTCGCCCG ACATCGCGCA CAAGACCGAA
GTCGGCGGCG TGTTCGTCGG CGTGCGTTCC GAAGCGCAGC TGCGCGACGA ATACGAGCAG
CTGCTGGCGC GCGTGGCGCT GAAGGCGCCA AAGGCCCGCA TCGCCGGCGT GCTGGTCGCG
CAGATGGTGC AGGGCGGCGT CGAGCTGATC CTGGGCACGA AGAAGGACCC GGTGTTCGGC
CCGATGGTGA TGGCCGGCCT GGGCGGCATC TTTGCCGAGA TATTCAAGGA CGTGGCGCTG
CAGCCCGCGC CCGTCGACGA GGCACAGGCC GGTGCGATGC TGCGCTCGCT CAAGGCCTTC
CCGCTGCTCG ACGGCGCGCG CGGCCGGCCC AGGGCCGACG TGCCGGCGGC CGCGAGGGCC
ATCGCGGCAC TGTCGCGCTT CGCGGTGCGG CATGCGGACA GCGTCTGCGA GATCGACATC
AACCCCCTGG TGGTGCTGGA ACAGGGCCGC GGCGCGCATG CGCTCGACGC GCTGCTGGTG
CCCGAGGAAC ACGCCATGAA AGGCAAGCAA TGA
|
|---|
| Protein sequence | MQATQVGHGL DALFKPRSIA IFGASDDVTK IGGRPLQFLQ KYGYGGGIYP INRKGGLVQS
LQAYASVAEL PEVPELAVIA VPPAGVLDAV QDCAQRGVKA AVILSAGFSE MGEEGSRLQA
RIGEVARASG MRIVGPNCLG AIGVPDKSIA TFSVALESSF PAAGSVGIVS QSGNLGSFTL
RMAGERGLGV SRMLTTGNEC DVDIADAIAS LAADPGTSVI LCCMETCRDG AKLMQAMAMA
REAGKPLVVL KVGVSEAGSA AAASHTGALA GSDAVFDAVL RQGGALRVPS IELLLEVGHA
LSVAGPARVP GGHRVAVLTA SGGFGVLLAD AASAQGLALP KLAAQTQARI LAAVPFAAPS
NPVDMTAQVS SRPEVLAQML DAMARDDSCN ALILQSANAF HVPRLRDVFL EALAQVRKDH
PARLILLCAR APEDVRARLN AMGFPVVEGI DAACATLAAL LRFGARDAAR IAAPAIARVP
LAAEAFATEA SAKAVLAEAG LPVPWEAVAC SLDEALAAAR DMGFPLVLKI VSPDIAHKTE
VGGVFVGVRS EAQLRDEYEQ LLARVALKAP KARIAGVLVA QMVQGGVELI LGTKKDPVFG
PMVMAGLGGI FAEIFKDVAL QPAPVDEAQA GAMLRSLKAF PLLDGARGRP RADVPAAARA
IAALSRFAVR HADSVCEIDI NPLVVLEQGR GAHALDALLV PEEHAMKGKQ
|
|---|
| |