Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5479 |
Symbol | |
ID | 7975173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012792 |
Strand | - |
Start bp | 180449 |
End bp | 182248 |
Gene Length | 1800 bp |
Protein Length | 599 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644796066 |
Product | Glutamate synthase (NADPH) |
Protein accession | YP_002947340 |
Protein GI | 239820155 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCAGCGAA CCGACATTGC CAACCCGGCC TATTTCCACA AGGTCGTCGA TTGCCAGTAC GCCTGCCCGG CGCACACCCC CGTCCCCGAA TACATCCGCA TGATCGCGCA GCGCCGCTAT GGCGACGCCT ACATGGTCAA CTGGGTGTCC AACGTCTTTC CCGGCATCCT CGGGCGCACC TGCGACCGGC CTTGCGAGCC GGCCTGCCGG CGCGGGCGGG TCGAACAAAG CAATGAGAAG ATTCCCGAGC CGGTGGCGAT CTGCCGGCTC AAGCGCGTGG CGGCCGACAT GAAGGAGGAC GTGCGCGCCC GCATGCCCAA GCCGGCGCCC GGCAACGGCA AGCGCATTGC CTGCGTGGGC GCGGGGCCGG CCTCGCTCAC CGTCGCGCGC GACCTGGCGC CGCTCGGCTA CGAGGTGACG GTGTTCGACG AGGAGGCCAA GGCCGGCGGC TTCATCCGCA CGCAGATCCC GCGCTTTCGG CTGCCGGAAT CGGTGATCGA CGAGGAGACC GGCTACATCC TGGACCTGGG CGTCGAGTTC CGCGGCGGCG AGCGCATCGG CTCGATGAAG GCGCTGATGG CCGAGGGCTG GGACGCGATC TTCGTCGGCT GCGGCGCGCC GCGCGGGCGC GACCTGGACA TTCCCGGGCG GCGGGAAGCG GCAGCCGCCA TCCACATCGG CATCGACTGG CTCAATTCCG TGTCCTTCGG CCACGTGAGC CGCATCGGCC GGCGCGTGAT CGTGCTGGGC GGCGGCAACA CGGCCATGGA CTGCTGCCGC TCGGCCCGGC GCCTGGGCGG CAGCGACGTG AAGGTGATCG TGCGCAGCGG CTTCGACGAA ATGAAGGCCT CGCCCTGGGA GAAGGAAGAC GCGCAGCACG AAGGCATTCC GATCATCGAC TTCCATGTGC CCAAGGCCTT CGTGCACGCG GAGGGCAAGC TGCTGGGCAT GACCTTCGAG CGCGTCCGCG CCGAGTACGA CGCGCAGGGC CGCCGCACGC TGGTGCCCAC CGGCGAGCCC GACGCCTGGT TCGAATGCGA CGAGGTGCTG GTGGCGGTGG GCCAGGAGAA CGCCTTTCCG TGGATCGAGC GCGACTGCGG CATCGCCTTC GACACCTCGG GCCTGCCCAT GCTCGACAAG AACACCTTCC AGTCGACGGT GCCCCATGTG CTGTTCGGCG GCGATGCGGC CTTCGGCCCG AAGAACATCA TCACGGCCGT GGCCCACGGC CACGAGGCGG CGGTGTCGAT CGACAAGCTG CTGCGCGCCG AGCTGGTCTA TGTTCGGCCG GCGCCCATGA CCAACCTGGT GTCGCAGAAG ATGGGCATCC ACGAGTGGAG CTACGACAAC GACACCTCCA ACGACCTGCG CTACAAGGTG CCGTGGGCCA AGGCCGAGAA GGCGCTGGCC AGCATCGCGG TGGAGGTGGA ACTGGGCTTC GACGCCGCCA CCGCCTTCAA GGAGGCCGAG CGCTGCCTGA ACTGCGATGT GCAGACGGTG TTCACCGAAT CCGCCTGCAT CGAATGCGAT GCCTGCGTGG ACATCTGCCC GATGGACTGC ATCAGCTTCA CCACCAACGG CGACGAGGCG GACCTGCGCC AGCGGCTCAA GGCGCCGGCG CTCAACCTGG CGCAGGACCT GTACGTGTCG GGCGGGCTCA AGACGGGCCG CGTGATGGTC AAGGACGAGG ACGTCTGCCT GCACTGCGGC CTGTGCGCCG AGCGCTGCCC CACGGGCGCC TGGGACATGC AGAAGTTCCT GCTGAAGATG ACACCTGCGG GGCAGGGGGC GACTGCATGA
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Protein sequence | MQRTDIANPA YFHKVVDCQY ACPAHTPVPE YIRMIAQRRY GDAYMVNWVS NVFPGILGRT CDRPCEPACR RGRVEQSNEK IPEPVAICRL KRVAADMKED VRARMPKPAP GNGKRIACVG AGPASLTVAR DLAPLGYEVT VFDEEAKAGG FIRTQIPRFR LPESVIDEET GYILDLGVEF RGGERIGSMK ALMAEGWDAI FVGCGAPRGR DLDIPGRREA AAAIHIGIDW LNSVSFGHVS RIGRRVIVLG GGNTAMDCCR SARRLGGSDV KVIVRSGFDE MKASPWEKED AQHEGIPIID FHVPKAFVHA EGKLLGMTFE RVRAEYDAQG RRTLVPTGEP DAWFECDEVL VAVGQENAFP WIERDCGIAF DTSGLPMLDK NTFQSTVPHV LFGGDAAFGP KNIITAVAHG HEAAVSIDKL LRAELVYVRP APMTNLVSQK MGIHEWSYDN DTSNDLRYKV PWAKAEKALA SIAVEVELGF DAATAFKEAE RCLNCDVQTV FTESACIECD ACVDICPMDC ISFTTNGDEA DLRQRLKAPA LNLAQDLYVS GGLKTGRVMV KDEDVCLHCG LCAERCPTGA WDMQKFLLKM TPAGQGATA
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