Gene Vapar_5479 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5479 
Symbol 
ID7975173 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012792 
Strand
Start bp180449 
End bp182248 
Gene Length1800 bp 
Protein Length599 aa 
Translation table11 
GC content68% 
IMG OID644796066 
ProductGlutamate synthase (NADPH) 
Protein accessionYP_002947340 
Protein GI239820155 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCAGCGAA CCGACATTGC CAACCCGGCC TATTTCCACA AGGTCGTCGA TTGCCAGTAC 
GCCTGCCCGG CGCACACCCC CGTCCCCGAA TACATCCGCA TGATCGCGCA GCGCCGCTAT
GGCGACGCCT ACATGGTCAA CTGGGTGTCC AACGTCTTTC CCGGCATCCT CGGGCGCACC
TGCGACCGGC CTTGCGAGCC GGCCTGCCGG CGCGGGCGGG TCGAACAAAG CAATGAGAAG
ATTCCCGAGC CGGTGGCGAT CTGCCGGCTC AAGCGCGTGG CGGCCGACAT GAAGGAGGAC
GTGCGCGCCC GCATGCCCAA GCCGGCGCCC GGCAACGGCA AGCGCATTGC CTGCGTGGGC
GCGGGGCCGG CCTCGCTCAC CGTCGCGCGC GACCTGGCGC CGCTCGGCTA CGAGGTGACG
GTGTTCGACG AGGAGGCCAA GGCCGGCGGC TTCATCCGCA CGCAGATCCC GCGCTTTCGG
CTGCCGGAAT CGGTGATCGA CGAGGAGACC GGCTACATCC TGGACCTGGG CGTCGAGTTC
CGCGGCGGCG AGCGCATCGG CTCGATGAAG GCGCTGATGG CCGAGGGCTG GGACGCGATC
TTCGTCGGCT GCGGCGCGCC GCGCGGGCGC GACCTGGACA TTCCCGGGCG GCGGGAAGCG
GCAGCCGCCA TCCACATCGG CATCGACTGG CTCAATTCCG TGTCCTTCGG CCACGTGAGC
CGCATCGGCC GGCGCGTGAT CGTGCTGGGC GGCGGCAACA CGGCCATGGA CTGCTGCCGC
TCGGCCCGGC GCCTGGGCGG CAGCGACGTG AAGGTGATCG TGCGCAGCGG CTTCGACGAA
ATGAAGGCCT CGCCCTGGGA GAAGGAAGAC GCGCAGCACG AAGGCATTCC GATCATCGAC
TTCCATGTGC CCAAGGCCTT CGTGCACGCG GAGGGCAAGC TGCTGGGCAT GACCTTCGAG
CGCGTCCGCG CCGAGTACGA CGCGCAGGGC CGCCGCACGC TGGTGCCCAC CGGCGAGCCC
GACGCCTGGT TCGAATGCGA CGAGGTGCTG GTGGCGGTGG GCCAGGAGAA CGCCTTTCCG
TGGATCGAGC GCGACTGCGG CATCGCCTTC GACACCTCGG GCCTGCCCAT GCTCGACAAG
AACACCTTCC AGTCGACGGT GCCCCATGTG CTGTTCGGCG GCGATGCGGC CTTCGGCCCG
AAGAACATCA TCACGGCCGT GGCCCACGGC CACGAGGCGG CGGTGTCGAT CGACAAGCTG
CTGCGCGCCG AGCTGGTCTA TGTTCGGCCG GCGCCCATGA CCAACCTGGT GTCGCAGAAG
ATGGGCATCC ACGAGTGGAG CTACGACAAC GACACCTCCA ACGACCTGCG CTACAAGGTG
CCGTGGGCCA AGGCCGAGAA GGCGCTGGCC AGCATCGCGG TGGAGGTGGA ACTGGGCTTC
GACGCCGCCA CCGCCTTCAA GGAGGCCGAG CGCTGCCTGA ACTGCGATGT GCAGACGGTG
TTCACCGAAT CCGCCTGCAT CGAATGCGAT GCCTGCGTGG ACATCTGCCC GATGGACTGC
ATCAGCTTCA CCACCAACGG CGACGAGGCG GACCTGCGCC AGCGGCTCAA GGCGCCGGCG
CTCAACCTGG CGCAGGACCT GTACGTGTCG GGCGGGCTCA AGACGGGCCG CGTGATGGTC
AAGGACGAGG ACGTCTGCCT GCACTGCGGC CTGTGCGCCG AGCGCTGCCC CACGGGCGCC
TGGGACATGC AGAAGTTCCT GCTGAAGATG ACACCTGCGG GGCAGGGGGC GACTGCATGA
 
Protein sequence
MQRTDIANPA YFHKVVDCQY ACPAHTPVPE YIRMIAQRRY GDAYMVNWVS NVFPGILGRT 
CDRPCEPACR RGRVEQSNEK IPEPVAICRL KRVAADMKED VRARMPKPAP GNGKRIACVG
AGPASLTVAR DLAPLGYEVT VFDEEAKAGG FIRTQIPRFR LPESVIDEET GYILDLGVEF
RGGERIGSMK ALMAEGWDAI FVGCGAPRGR DLDIPGRREA AAAIHIGIDW LNSVSFGHVS
RIGRRVIVLG GGNTAMDCCR SARRLGGSDV KVIVRSGFDE MKASPWEKED AQHEGIPIID
FHVPKAFVHA EGKLLGMTFE RVRAEYDAQG RRTLVPTGEP DAWFECDEVL VAVGQENAFP
WIERDCGIAF DTSGLPMLDK NTFQSTVPHV LFGGDAAFGP KNIITAVAHG HEAAVSIDKL
LRAELVYVRP APMTNLVSQK MGIHEWSYDN DTSNDLRYKV PWAKAEKALA SIAVEVELGF
DAATAFKEAE RCLNCDVQTV FTESACIECD ACVDICPMDC ISFTTNGDEA DLRQRLKAPA
LNLAQDLYVS GGLKTGRVMV KDEDVCLHCG LCAERCPTGA WDMQKFLLKM TPAGQGATA